Guide to the Human Genome
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Name: MRPS27 Sequence: fasta or formatted (414aa) NCBI GI: 186928850
Description:

mitochondrial ribosomal protein S27

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         35           2
 C cysteine            1.4          6           1
 D aspartate           4.8         20           1
 E glutamate           8.7         36           3
 F phenylalanine       3.1         13           1
 G glycine             3.6         15           1
 H histidine           2.2          9           1
 I isoleucine          3.6         15           1
 K lysine              7.5         31           2
 L leucine            14.0         58           3
 M methionine          1.9          8           2
 N asparagine          3.1         13           1
 P proline             2.7         11           1
 Q glutamine           7.7         32           3
 R arginine            4.3         18           2
 S serine              7.7         32           2
 T threonine           3.4         14           2
 V valine              5.3         22           2
 W tryptophan          1.7          7           1
 Y tyrosine            4.6         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S27 
PTCD2                 0.040   pentatricopeptide repeat domain 2 
BSN                   0.024   bassoon protein 
SWAP70                0.020   SWAP-70 protein 
PLEC1                 0.018   plectin 1 isoform 11 
PLEC1                 0.018   plectin 1 isoform 10 
PLEC1                 0.018   plectin 1 isoform 8 
PLEC1                 0.018   plectin 1 isoform 7 
PLEC1                 0.018   plectin 1 isoform 6 
PLEC1                 0.018   plectin 1 isoform 3 
PLEC1                 0.018   plectin 1 isoform 2 
PLEC1                 0.018   plectin 1 isoform 1 
KTN1                  0.016   kinectin 1 isoform a 
KTN1                  0.016   kinectin 1 isoform a 
MYH7B                 0.016   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MED15                 0.013   mediator complex subunit 15 isoform a 
MED15                 0.013   mediator complex subunit 15 isoform b 
KIF3B                 0.013   kinesin family member 3B 
MINK1                 0.013   misshapen/NIK-related kinase isoform 4 
MINK1                 0.013   misshapen/NIK-related kinase isoform 2 
MINK1                 0.013   misshapen/NIK-related kinase isoform 3 
MINK1                 0.013   misshapen/NIK-related kinase isoform 1 
ZNF853                0.011   zinc finger protein 853 
CALD1                 0.011   caldesmon 1 isoform 1 
FOXP2                 0.011   forkhead box P2 isoform I 
FOXP2                 0.011   forkhead box P2 isoform III 
FOXP2                 0.011   forkhead box P2 isoform II 
GCOM1                 0.011   GRINL1A combined protein isoform 2 
GCOM1                 0.011   GRINL1A combined protein isoform 1 
GCOM1                 0.011   GRINL1A combined protein isoform 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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