Guide to the Human Genome
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Name: SLC15A4 Sequence: fasta or formatted (577aa) NCBI GI: 21717816
Description:

solute carrier family 15, member 4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         73           8
 C cysteine            2.3         13           2
 D aspartate           2.6         15           1
 E glutamate           2.9         17           2
 F phenylalanine       6.6         38           4
 G glycine             9.4         54           3
 H histidine           1.6          9           2
 I isoleucine          5.9         34           2
 K lysine              3.3         19           1
 L leucine            13.0         75           3
 M methionine          2.1         12           1
 N asparagine          2.8         16           1
 P proline             4.3         25           2
 Q glutamine           3.3         19           2
 R arginine            4.7         27           2
 S serine              7.3         42           2
 T threonine           4.9         28           3
 V valine              6.1         35           2
 W tryptophan          1.6          9           2
 Y tyrosine            2.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 15, member 4 
SLC15A3               0.455   solute carrier family 15, member 3 
SLC15A2               0.080   peptide transporter 2 isoform a 
SLC15A1               0.071   solute carrier family 15 (oligopeptide transporter), ...
SLC15A2               0.065   peptide transporter 2 isoform b 
SLC17A5               0.008   sialin 
HOXD11                0.007   homeobox D11 
POU3F1                0.007   POU domain, class 3, transcription factor 1 
OR5B21                0.007   olfactory receptor, family 5, subfamily B, member 21...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TMEM179B              0.006   transmembrane protein 179B 
LTC4S                 0.005   leukotriene C4 synthase 
PHOX2B                0.005   paired-like homeobox 2b 
ZSWIM6                0.005   zinc finger, SWIM-type containing 6 
LOC100289413          0.005   PREDICTED: hypothetical protein XP_002342934 
IRX1                  0.004   iroquois homeobox protein 1 
FGF20                 0.004   fibroblast growth factor 20 
FAM86C                0.004   hypothetical protein LOC55199 isoform 1 
FAM86C                0.004   hypothetical protein LOC55199 isoform 3 
FAM86C                0.004   hypothetical protein LOC55199 isoform 2 
LOC100289716          0.004   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.004   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.004   PREDICTED: hypothetical protein 
CHD4                  0.004   chromodomain helicase DNA binding protein 4 
KRTAP10-1             0.004   keratin associated protein 10-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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