Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292751 Sequence: fasta or formatted (261aa) NCBI GI: 239757095
Description:

PREDICTED: similar to hCG2005276

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         35           3
 C cysteine            1.1          3           1
 D aspartate           1.9          5           2
 E glutamate           3.8         10           1
 F phenylalanine       1.5          4           1
 G glycine            11.9         31           2
 H histidine           2.3          6           1
 I isoleucine          1.1          3           1
 K lysine              1.1          3           1
 L leucine             9.2         24           2
 M methionine          1.1          3           1
 N asparagine          0.8          2           1
 P proline             9.2         24           2
 Q glutamine           6.9         18           2
 R arginine           10.3         27           2
 S serine             11.9         31           2
 T threonine           4.2         11           1
 V valine              2.7          7           1
 W tryptophan          4.6         12           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2005276 
LOC100290602          0.890   PREDICTED: hypothetical protein XP_002347933 
LOC100288051          0.890   PREDICTED: hypothetical protein XP_002344200 
C2orf55               0.023   hypothetical protein LOC343990 
FLG                   0.021   filaggrin 
LOC100292124          0.019   PREDICTED: hypothetical protein XP_002346387 
LOC100133915          0.019   PREDICTED: hypothetical protein 
ZC3H18                0.019   zinc finger CCCH-type containing 18 
LOC100131251          0.017   PREDICTED: hypothetical protein 
LOC100289316          0.017   PREDICTED: hypothetical protein 
LOC100131251          0.017   PREDICTED: hypothetical protein 
LOC100289316          0.017   PREDICTED: hypothetical protein XP_002343619 
LENG8                 0.017   leukocyte receptor cluster member 8 
LOC100290358          0.015   PREDICTED: hypothetical protein XP_002346903 
LOC100294079          0.015   PREDICTED: hypothetical protein 
PLEKHA4               0.015   pleckstrin homology domain containing family A memb...
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
ANKRD36               0.013   PREDICTED: ankyrin repeat domain 36 
FRMPD3                0.013   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.013   PREDICTED: FERM and PDZ domain containing 3 
LOC100288796          0.013   PREDICTED: hypothetical protein 
FRMPD3                0.013   PREDICTED: FERM and PDZ domain containing 3 
LOC100288796          0.013   PREDICTED: hypothetical protein XP_002343710 
LCP2                  0.012   lymphocyte cytosolic protein 2 
LOC100292568          0.012   PREDICTED: hypothetical protein 
LOC100291146          0.012   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.012   PREDICTED: hypothetical protein XP_002342442 
C7orf70               0.012   hypothetical protein LOC84792 
CRNN                  0.012   cornulin 
LOC100291136          0.012   PREDICTED: hypothetical protein XP_002347630 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press