Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288051 Sequence: fasta or formatted (282aa) NCBI GI: 239746116
Description:

PREDICTED: hypothetical protein XP_002344200

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         34           3
 C cysteine            2.5          7           2
 D aspartate           2.1          6           2
 E glutamate           4.6         13           1
 F phenylalanine       1.4          4           1
 G glycine            13.5         38           2
 H histidine           2.5          7           1
 I isoleucine          1.4          4           1
 K lysine              1.1          3           1
 L leucine             8.9         25           2
 M methionine          1.4          4           1
 N asparagine          0.7          2           1
 P proline             7.8         22           2
 Q glutamine           5.7         16           2
 R arginine           10.3         29           2
 S serine             11.7         33           2
 T threonine           3.9         11           1
 V valine              3.2          9           1
 W tryptophan          4.6         13           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344200 
LOC100290602          1.000   PREDICTED: hypothetical protein XP_002347933 
LOC100292751          0.813   PREDICTED: similar to hCG2005276 
LOC643355             0.023   PREDICTED: hypothetical protein 
LOC643355             0.023   PREDICTED: hypothetical protein 
FLG                   0.019   filaggrin 
LOC100292124          0.018   PREDICTED: hypothetical protein XP_002346387 
LOC100133915          0.018   PREDICTED: hypothetical protein 
LOC100131251          0.016   PREDICTED: hypothetical protein 
LOC100131251          0.016   PREDICTED: hypothetical protein 
LENG8                 0.016   leukocyte receptor cluster member 8 
ZC3H18                0.014   zinc finger CCCH-type containing 18 
LOC100290358          0.014   PREDICTED: hypothetical protein XP_002346903 
LOC100294079          0.014   PREDICTED: hypothetical protein 
NACA                  0.014   nascent polypeptide-associated complex alpha subuni...
LOC100289316          0.012   PREDICTED: hypothetical protein 
LOC100289316          0.012   PREDICTED: hypothetical protein XP_002343619 
LOC100292623          0.012   PREDICTED: hypothetical protein 
LOC100290254          0.012   PREDICTED: hypothetical protein XP_002347960 
ANKRD36               0.012   PREDICTED: ankyrin repeat domain 36 
FRMPD3                0.012   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.012   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.012   PREDICTED: FERM and PDZ domain containing 3 
C2orf55               0.012   hypothetical protein LOC343990 
LOC100292568          0.011   PREDICTED: hypothetical protein 
LOC100291146          0.011   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.011   PREDICTED: hypothetical protein XP_002342442 
C7orf70               0.011   hypothetical protein LOC84792 
LOC100287933          0.011   PREDICTED: hypothetical protein XP_002343257 
EFHA2                 0.011   EF-hand domain family, member A2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press