Guide to the Human Genome
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Name: TAAR6 Sequence: fasta or formatted (345aa) NCBI GI: 28173558
Description:

trace amine associated receptor 6

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         25           2
 C cysteine            4.6         16           2
 D aspartate           2.9         10           2
 E glutamate           2.6          9           2
 F phenylalanine       7.8         27           2
 G glycine             5.2         18           2
 H histidine           1.4          5           1
 I isoleucine          8.1         28           2
 K lysine              3.5         12           2
 L leucine             9.0         31           2
 M methionine          2.9         10           1
 N asparagine          4.1         14           1
 P proline             3.5         12           1
 Q glutamine           1.7          6           1
 R arginine            3.2         11           2
 S serine             10.1         35           3
 T threonine           5.5         19           1
 V valine              9.9         34           2
 W tryptophan          1.7          6           1
 Y tyrosine            4.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trace amine associated receptor 6 
TAAR8                 0.798   trace amine associated receptor 8 
TAAR9                 0.715   trace amine associated receptor 9 
TAAR5                 0.412   trace amine associated receptor 5 
TAAR1                 0.373   trace amine associated receptor 1 
TAAR2                 0.353   trace amine associated receptor 2 isoform 1 
TAAR2                 0.339   trace amine associated receptor 2 isoform 2 
HTR4                  0.226   serotonin 5-HT4 receptor isoform n 
HTR4                  0.226   serotonin 5-HT4 receptor isoform i 
HTR4                  0.226   serotonin 5-HT4 receptor isoform hb 
HTR4                  0.226   serotonin 5-HT4 receptor isoform d 
HTR4                  0.226   serotonin 5-HT4 receptor isoform a 
HTR4                  0.226   serotonin 5-HT4 receptor isoform g 
HTR4                  0.226   serotonin 5-HT4 receptor isoform b 
ADRA1A                0.208   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.208   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.208   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.208   alpha-1A-adrenergic receptor isoform 3 
ADRB2                 0.196   adrenergic, beta-2-, receptor, surface 
HRH2                  0.190   histamine receptor H2 isoform 1 
HRH2                  0.190   histamine receptor H2 isoform 2 
HTR1B                 0.187   5-hydroxytryptamine (serotonin) receptor 1B 
HTR1D                 0.186   5-hydroxytryptamine (serotonin) receptor 1D 
ADRA1B                0.186   alpha-1B-adrenergic receptor 
DRD1                  0.176   dopamine receptor D1 
HTR7                  0.176   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.176   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.176   5-hydroxytryptamine receptor 7 isoform a 
HTR1F                 0.171   5-hydroxytryptamine (serotonin) receptor 1F 
HTR6                  0.162   5-hydroxytryptamine (serotonin) receptor 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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