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Search of human proteins with 15029506
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15029506 homeobox D8 [Homo sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15029506 homeobox D8 [Homo sapiens] 619 e-177
gi|12056969 homeobox C8 [Homo sapiens] 278 3e-75
gi|13273317 homeobox B8 [Homo sapiens] 265 4e-71
gi|85068580 homeobox B7 [Homo sapiens] 127 1e-29
gi|13273315 homeobox B4 [Homo sapiens] 125 3e-29
gi|24497556 homeobox A7 [Homo sapiens] 124 7e-29
gi|23503237 homeobox B6 [Homo sapiens] 123 2e-28
gi|23397672 homeobox D4 [Homo sapiens] 122 5e-28
gi|24497517 homeobox A5 [Homo sapiens] 122 5e-28
gi|13489077 homeobox A6 [Homo sapiens] 115 3e-26
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 113 2e-25
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 113 2e-25
gi|23510368 homeobox D11 [Homo sapiens] 112 5e-25
gi|11321638 homeobox C5 [Homo sapiens] 110 1e-24
gi|4504469 homeobox B5 [Homo sapiens] 110 1e-24
gi|24497513 homeobox A3 isoform a [Homo sapiens] 105 5e-23
gi|13562112 homeobox A3 isoform a [Homo sapiens] 105 5e-23
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 104 1e-22
gi|148613882 homeobox A4 [Homo sapiens] 103 2e-22
gi|24497538 homeobox C4 [Homo sapiens] 102 5e-22
gi|24497540 homeobox C4 [Homo sapiens] 102 5e-22
gi|19923391 homeobox D3 [Homo sapiens] 101 7e-22
gi|182765442 homeobox A10 isoform a [Homo sapiens] 96 5e-20
gi|15029508 homeobox B9 [Homo sapiens] 93 3e-19
gi|24497547 homeobox C9 [Homo sapiens] 91 9e-19
gi|23097236 homeobox A9 [Homo sapiens] 91 2e-18
gi|121114296 caudal type homeobox 1 [Homo sapiens] 90 2e-18
gi|89257348 homeo box HB9 [Homo sapiens] 90 2e-18
gi|4504465 homeobox B2 [Homo sapiens] 89 3e-18
gi|24497551 homeobox A10 isoform b [Homo sapiens] 89 6e-18
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 619 bits (1596), Expect = e-177
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG 60
MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
Sbjct: 1 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG 60
Query: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP 120
FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
Sbjct: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP 120
Query: 121 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS 180
PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
Sbjct: 121 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS 180
Query: 181 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ 240
SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
Sbjct: 181 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ 240
Query: 241 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN 290
VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
Sbjct: 241 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN 290
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 278 bits (712), Expect = 3e-75
Identities = 157/288 (54%), Positives = 177/288 (61%), Gaps = 52/288 (18%)
Query: 1 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG 60
MSSYFVNPL+SKYKA GE++ P YYDC F VG HA G SA G
Sbjct: 1 MSSYFVNPLFSKYKA--------GESLEPAYYDCRFPQSVGRSHALVYGP----GGSAPG 48
Query: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPG-GGSPAAAYQAAPPPPPHPPPPP 119
F HA Q++FH G G + YQ P
Sbjct: 49 FQHASHHV----------------------QDFFHHGTSGISNSGYQQNP---------- 76
Query: 120 PPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG-NIGEDPDHLNQ 178
C ++CHG+ +KFYGY+ L RQ ++ QQEA +VQYPDCKSS+ N E HLNQ
Sbjct: 77 ----CS-LSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQ 131
Query: 179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238
+SSPS MFPWMRP A PGRR GRQTYSR+QTLELEKEFLFNPYLTRKRRIEVSHAL LTE
Sbjct: 132 NSSPSLMFPWMRPHA-PGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTE 190
Query: 239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAE 286
RQVKIWFQNRRMKWKKENNKDK P +R E K E E +E EE+ E
Sbjct: 191 RQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEEEGNEEEEKEEEEKE 238
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 265 bits (677), Expect = 4e-71
Identities = 147/276 (53%), Positives = 176/276 (63%), Gaps = 53/276 (19%)
Query: 1 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG 60
MSSYFVN L+SKYK GE++ P YYDC FA ++GGR +YG S+ G
Sbjct: 1 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG 46
Query: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP 120
+ HPS + QE++H A YQ P
Sbjct: 47 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP----------- 73
Query: 121 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS 179
C +ACHG+P FYGYD LQRQ +F Q + +LVQY DCK +++ +GE+ + QS
Sbjct: 74 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS 128
Query: 180 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER 239
SP+Q+FPWMRPQAA GRRRGRQTYSR+QTLELEKEFLFNPYLTRKRRIEVSHAL LTER
Sbjct: 129 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER 188
Query: 240 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKK 275
QVKIWFQNRRMKWKKENNKDKFP S+ E ++ E +K
Sbjct: 189 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQK 224
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 127 bits (319), Expect = 1e-29
Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 73/285 (25%)
Query: 2 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 61
S Y+ N L+SKY A+++ A P C FA
Sbjct: 3 SLYYANTLFSKYPASSSVFATGAF---PEQTSCAFAS----------------------- 36
Query: 62 PHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPP 121
+P P G G G + +PGGG A A
Sbjct: 37 -----------NPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAA-------------- 71
Query: 122 PPCGGIACHG---EPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQ 178
G+ G EP+ F N+ P +Q V D ++G E D
Sbjct: 72 ----GVYAAGYGLEPSSF----NMHCAPF---EQNLSGVCPGDSAKAAG-AKEQRDSDLA 119
Query: 179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238
+ S +++PWMR + R+RGRQTY+R+QTLELEKEF +N YLTR+RRIE++H L LTE
Sbjct: 120 AESNFRIYPWMR-SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTE 178
Query: 239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEED 283
RQ+KIWFQNRRMKWKKE NK P + G+ + EA+E EE+
Sbjct: 179 RQIKIWFQNRRMKWKKE-NKTAGPGT-----TGQDRAEAEEEEEE 217
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 125 bits (315), Expect = 3e-29
Identities = 84/218 (38%), Positives = 110/218 (50%), Gaps = 35/218 (16%)
Query: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSP----------AAAYQAAPP 110
FP + + PS G GG+ R + F P G AA PP
Sbjct: 17 FPPCEEYSQSDYLPSDHSPGYYAGGQ--RRESSFQPEAGFGRRAACTVQRYAACRDPGPP 74
Query: 111 PPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIG 170
PPP PPPPPPPPP G++ G L +P + + P C
Sbjct: 75 PPPPPPPPPPPPP--GLSPRAPAPPPAGA--LLPEPGQRCEAVSSSPPPPPC-------A 123
Query: 171 EDPDHLNQSSSPSQ---MFPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLF 218
++P H + S S + ++PWMR P A G +R R Y+R Q LELEKEF +
Sbjct: 124 QNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHY 183
Query: 219 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
N YLTR+RR+E++HAL L+ERQ+KIWFQNRRMKWKK++
Sbjct: 184 NRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDH 221
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 124 bits (312), Expect = 7e-29
Identities = 101/288 (35%), Positives = 130/288 (45%), Gaps = 76/288 (26%)
Query: 2 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 61
SSY+VN L+SKY A A+ A PT C FAP + YG A F
Sbjct: 3 SSYYVNALFSKYTAGASLFQNA----EPT--SCSFAPN---------SQRSGYGAGAGAF 47
Query: 62 PHAPPQAHAHPHP---SPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118
P + P SP SG G G + + G P A+Y P
Sbjct: 48 ASTVPGLYNVNSPLYQSPFASGYGL------GADAY---GNLPCASYDQNIPGL------ 92
Query: 119 PPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQ 178
C +A K + E H
Sbjct: 93 -----CSDLA----------------------------------KGACDKTDEGALH-GA 112
Query: 179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238
+ + +++PWMR + P R+RGRQTY+R+QTLELEKEF FN YLTR+RRIE++HAL LTE
Sbjct: 113 AEANFRIYPWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 171
Query: 239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAE 286
RQ+KIWFQNRRMKWKKE +KD+ P + +G A D+A+
Sbjct: 172 RQIKIWFQNRRMKWKKE-HKDEGPTA-AAAPEGAVPSAAATAAADKAD 217
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 123 bits (308), Expect = 2e-28
Identities = 83/211 (39%), Positives = 107/211 (50%), Gaps = 34/211 (16%)
Query: 76 PPPSGTGCGGREGRG-QEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPA 134
P P G G G +G Y+ P GG Y A P P P A + E
Sbjct: 40 PAPYGPGPGQDKGFATSSYYPPAGGG----YGRAAPCDYGPAP----------AFYREKE 85
Query: 135 KFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAA 194
QP F + DC GE + + S+P ++PWM+ +
Sbjct: 86 SACALSGADEQPPFHPEPRKS-----DCAQDKSVFGETEEQ--KCSTP--VYPWMQRMNS 136
Query: 195 -------PGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQN 247
P RRGRQTY+R+QTLELEKEF +N YLTR+RRIE++HAL LTERQ+KIWFQN
Sbjct: 137 CNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 196
Query: 248 RRMKWKKENNKDKFPVSRQEVKDGETKKEAQ 278
RRMKWKKE+ K + Q + E +K+A+
Sbjct: 197 RRMKWKKES---KLLSASQLSAEEEEEKQAE 224
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 122 bits (305), Expect = 5e-28
Identities = 90/240 (37%), Positives = 113/240 (47%), Gaps = 44/240 (18%)
Query: 27 INPTYYDCHFAP---EVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPP---SG 80
+N Y D F P + G + A YG A G PP + P P SG
Sbjct: 8 VNSKYVDPKFPPCEEYLQGGYLGEQGA-DYYGGGAQGADFQPPGLYPRPDFGEQPFGGSG 66
Query: 81 TGCGGR---EGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFY 137
G G G GQE PGG + AAP P PP PPP P G A+ Y
Sbjct: 67 PGPGSALPARGHGQEPGGPGG------HYAAPGEPCPAPPAPPPAPLPG-------ARAY 113
Query: 138 GYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGR 197
+ ++ P T ++ +V YP K H+N + P G
Sbjct: 114 SQSDPKQPPSGTALKQPAVV-YPWMKKV---------HVNS----------VNPNYTGGE 153
Query: 198 -RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
+R R Y+R Q LELEKEF FN YLTR+RRIE++H L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 154 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH 213
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 122 bits (305), Expect = 5e-28
Identities = 75/197 (38%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 79 SGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIA-CHGEPAKFY 137
SG+G G R + Y +PA + P H P P P P C +A G +
Sbjct: 59 SGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP-CSAVAPSPGSDSHHG 117
Query: 138 GYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGED-PDHLNQSSSPS----------QMF 186
G ++L + + + + ++ ED P Q+S+ S Q++
Sbjct: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY 177
Query: 187 PWMRPQ-------AAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER 239
PWMR P +R R Y+R+QTLELEKEF FN YLTR+RRIE++HAL L+ER
Sbjct: 178 PWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSER 237
Query: 240 QVKIWFQNRRMKWKKEN 256
Q+KIWFQNRRMKWKK+N
Sbjct: 238 QIKIWFQNRRMKWKKDN 254
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 115 bits (289), Expect = 3e-26
Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 12/123 (9%)
Query: 160 PDCKSSSGNIGEDPDHLNQSSSPSQMFPWM-RPQAAPGR------RRGRQTYSRFQTLEL 212
PD S G D + +SP ++PWM R + G RRGRQTY+R+QTLEL
Sbjct: 113 PDSSSGQGKALHDEGADRKYTSP--VYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLEL 170
Query: 213 EKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN---NKDKFPVSRQEVK 269
EKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN N + E K
Sbjct: 171 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAK 230
Query: 270 DGE 272
GE
Sbjct: 231 AGE 233
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 113 bits (282), Expect = 2e-25
Identities = 54/81 (66%), Positives = 65/81 (80%), Gaps = 7/81 (8%)
Query: 184 QMFPWMRPQAAPG-------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALAL 236
Q++PWM+ + RRRGRQ YSR+QTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 39 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 98
Query: 237 TERQVKIWFQNRRMKWKKENN 257
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 99 TERQIKIWFQNRRMKWKKESN 119
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 113 bits (282), Expect = 2e-25
Identities = 54/81 (66%), Positives = 65/81 (80%), Gaps = 7/81 (8%)
Query: 184 QMFPWMRPQAAPG-------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALAL 236
Q++PWM+ + RRRGRQ YSR+QTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
Query: 237 TERQVKIWFQNRRMKWKKENN 257
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 181 TERQIKIWFQNRRMKWKKESN 201
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 112 bits (279), Expect = 5e-25
Identities = 90/251 (35%), Positives = 115/251 (45%), Gaps = 32/251 (12%)
Query: 10 YSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAH 69
Y+ Y AAAAAAAAA A P G R A + +A G PH P A
Sbjct: 103 YAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVC-AAPGPPHGPAGAA 161
Query: 70 AHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPP---PHPPPPPPPPPCGG 126
++ + S G G +G + F Y+AAP PP P PPPPP PP G
Sbjct: 162 SNFY-----SAVGRNGILPQGFDQF----------YEAAPGPPFAGPQPPPPPAPPQPEG 206
Query: 127 IACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMF 186
A G+P G T E + SG GE P + S
Sbjct: 207 AADKGDPRTGAGGGGGSPCTKATPGSEPK-----GAAEGSGGDGEGPPGEAGAEKSSSA- 260
Query: 187 PWMRPQAAPGR-RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWF 245
AP R R+ R Y+++Q ELE+EF FN Y+ +++R+++S L LT+RQVKIWF
Sbjct: 261 ------VAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWF 314
Query: 246 QNRRMKWKKEN 256
QNRRMK KK N
Sbjct: 315 QNRRMKEKKLN 325
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 110 bits (275), Expect = 1e-24
Identities = 68/168 (40%), Positives = 87/168 (51%), Gaps = 23/168 (13%)
Query: 109 PPPPP-----------HPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELV 157
PPP P +P P P C A G G D Q+A
Sbjct: 50 PPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAP---GRDEAAPLNPGMYSQKAARP 106
Query: 158 QYPDCKSSSGNIGED------PDHLNQSSSPSQMFPWMRP---QAAPGRRRGRQTYSRFQ 208
+ SSG I E+ P L+Q +P Q++PWM +R R +Y+R+Q
Sbjct: 107 ALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQ 166
Query: 209 TLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
TLELEKEF FN YLTR+RRIE+++ L L ERQ+KIWFQNRRMKWKK++
Sbjct: 167 TLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDS 214
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 110 bits (275), Expect = 1e-24
Identities = 51/79 (64%), Positives = 61/79 (77%), Gaps = 6/79 (7%)
Query: 184 QMFPWMRP------QAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALT 237
Q+FPWMR P +R R Y+R+QTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
Query: 238 ERQVKIWFQNRRMKWKKEN 256
ERQ+KIWFQNRRMKWKK+N
Sbjct: 235 ERQIKIWFQNRRMKWKKDN 253
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 105 bits (262), Expect = 5e-23
Identities = 88/261 (33%), Positives = 115/261 (44%), Gaps = 27/261 (10%)
Query: 4 YFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPH 63
Y + +Y Y AA A P Y A G + A +LQ +SA G P
Sbjct: 7 YDSSAIYGGYPYQAANGFAYNANQQP--YPASAALGADGEYHRPACSLQS-PSSAGGHPK 63
Query: 64 APPQAHA-----HPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118
A + A PS PPS G+ HP P AA A PP P P PP
Sbjct: 64 AHELSEACLRTLSAPPSQPPS---------LGEPPLHPP--PPQAAPPAPQPPQPAPQPP 112
Query: 119 PP----PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPD 174
P PPP + + N + P+ + A+ + +P K S N +
Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKT- 170
Query: 175 HLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHAL 234
+ SSS P +R R Y+ Q +ELEKEF FN YL R RR+E+++ L
Sbjct: 171 --SSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 228
Query: 235 ALTERQVKIWFQNRRMKWKKE 255
LTERQ+KIWFQNRRMK+KK+
Sbjct: 229 NLTERQIKIWFQNRRMKYKKD 249
Score = 31.2 bits (69), Expect = 1.1
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 28/107 (26%)
Query: 54 YGNSAAGFPHAPPQAHAHPHP-SPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPP 112
Y NS ++ P P P S PP GT G P A+Y A+ P
Sbjct: 276 YLNSMHSLVNSVPYEPQSPPPFSKPPQGTY----------------GLPPASYPASLPSC 319
Query: 113 PHPPPPPPPPPCGGIACHGEP-----------AKFYGYDNLQRQPIF 148
PPPP G G P YG ++Q P+F
Sbjct: 320 APPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVF 366
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 105 bits (262), Expect = 5e-23
Identities = 88/261 (33%), Positives = 115/261 (44%), Gaps = 27/261 (10%)
Query: 4 YFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPH 63
Y + +Y Y AA A P Y A G + A +LQ +SA G P
Sbjct: 7 YDSSAIYGGYPYQAANGFAYNANQQP--YPASAALGADGEYHRPACSLQS-PSSAGGHPK 63
Query: 64 APPQAHA-----HPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118
A + A PS PPS G+ HP P AA A PP P P PP
Sbjct: 64 AHELSEACLRTLSAPPSQPPS---------LGEPPLHPP--PPQAAPPAPQPPQPAPQPP 112
Query: 119 PP----PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPD 174
P PPP + + N + P+ + A+ + +P K S N +
Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKT- 170
Query: 175 HLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHAL 234
+ SSS P +R R Y+ Q +ELEKEF FN YL R RR+E+++ L
Sbjct: 171 --SSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 228
Query: 235 ALTERQVKIWFQNRRMKWKKE 255
LTERQ+KIWFQNRRMK+KK+
Sbjct: 229 NLTERQIKIWFQNRRMKYKKD 249
Score = 31.2 bits (69), Expect = 1.1
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 28/107 (26%)
Query: 54 YGNSAAGFPHAPPQAHAHPHP-SPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPP 112
Y NS ++ P P P S PP GT G P A+Y A+ P
Sbjct: 276 YLNSMHSLVNSVPYEPQSPPPFSKPPQGTY----------------GLPPASYPASLPSC 319
Query: 113 PHPPPPPPPPPCGGIACHGEP-----------AKFYGYDNLQRQPIF 148
PPPP G G P YG ++Q P+F
Sbjct: 320 APPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVF 366
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 104 bits (259), Expect = 1e-22
Identities = 70/201 (34%), Positives = 90/201 (44%), Gaps = 32/201 (15%)
Query: 83 CGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNL 142
C + G E+ PA Y PPPP PP P P G G P Y+
Sbjct: 18 CAFQRGPAPEF---SASPPACLYMGRQPPPP---PPHPFPGALGALEQGSPPDISPYEV- 70
Query: 143 QRQPIFTTQQEAELVQY-------PDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAP 195
P+ A L + P + G +P L + + FPWM+ A
Sbjct: 71 --PPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAH 128
Query: 196 G----------------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER 239
+R R Y+R Q LELEKEFLFN Y++R RR+E++ L LTER
Sbjct: 129 AWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTER 188
Query: 240 QVKIWFQNRRMKWKKENNKDK 260
+KIWFQNRRMKWKKE +K +
Sbjct: 189 HIKIWFQNRRMKWKKEEDKKR 209
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 103 bits (257), Expect = 2e-22
Identities = 93/275 (33%), Positives = 115/275 (41%), Gaps = 53/275 (19%)
Query: 27 INPTYYDCHFAP-EVGGRHAAAAAALQLYGNSAAGF--PHAPPQAHAH-PHPSPPPSGTG 82
IN Y + F P E +H+ + A G G+ P APP H P P +G
Sbjct: 8 INSNYIEPKFPPFEEYAQHSGSGGADGGPGGGP-GYQQPPAPPTQHLPLQQPQLPHAG-- 64
Query: 83 CGGREGRGQEY--------------FHPGGGSPAAAYQ---AAPPPPPHPPPPPPPPPCG 125
GGRE Y +P G+ AY P PP P PP
Sbjct: 65 -GGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQA 123
Query: 126 GIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPD-CKSSSGNIG-------------- 170
HG A LQ Q Q A P C+++ G
Sbjct: 124 KGPAHGLHASHV----LQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLL 179
Query: 171 EDPDHLNQSSSPSQMFPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLFNPY 221
D L ++PWM+ P G +R R Y+R Q LELEKEF FN Y
Sbjct: 180 ADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRY 239
Query: 222 LTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
LTR+RRIE++H L L+ERQVKIWFQNRRMKWKK++
Sbjct: 240 LTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH 274
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 102 bits (253), Expect = 5e-22
Identities = 74/218 (33%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 52 QLYGNSA-AGFPHAPPQAHAHPHPSP--PPSGTGCGGREGRGQEYFHPGGGSPAAAYQAA 108
+ YG + +GF H + + P P P P C +G G H PA QA
Sbjct: 35 EYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGH----GPA---QAG 87
Query: 109 PPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGN 168
P P P G + PA P C +
Sbjct: 88 HHHPEKSQSLCEPAPLSGASASPSPAP------------------------PACSQPA-- 121
Query: 169 IGEDPDHLNQSSSPSQM-FPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLF 218
PDH + ++S + +PWM+ P G +R R Y+R Q LELEKEF +
Sbjct: 122 ----PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHY 177
Query: 219 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 178 NRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH 215
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 102 bits (253), Expect = 5e-22
Identities = 74/218 (33%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 52 QLYGNSA-AGFPHAPPQAHAHPHPSP--PPSGTGCGGREGRGQEYFHPGGGSPAAAYQAA 108
+ YG + +GF H + + P P P P C +G G H PA QA
Sbjct: 35 EYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGH----GPA---QAG 87
Query: 109 PPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGN 168
P P P G + PA P C +
Sbjct: 88 HHHPEKSQSLCEPAPLSGASASPSPAP------------------------PACSQPA-- 121
Query: 169 IGEDPDHLNQSSSPSQM-FPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLF 218
PDH + ++S + +PWM+ P G +R R Y+R Q LELEKEF +
Sbjct: 122 ----PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHY 177
Query: 219 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 178 NRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH 215
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 101 bits (252), Expect = 7e-22
Identities = 79/229 (34%), Positives = 99/229 (43%), Gaps = 44/229 (19%)
Query: 54 YGNSAAGFPHAPPQAHAH----------------PHPSPPPSGTGCGG---REGRGQEYF 94
YG S P+ PP A + P +P G G R G G
Sbjct: 41 YGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQG 100
Query: 95 HPGGGSPAAAYQAAPPPPPHPPPPPPPP-----PCGGIACH---GEPAKFYGYDNLQRQP 146
GG P PP P PPPP PP P GG+ G P + +Q
Sbjct: 101 GGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQ- 159
Query: 147 IFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSR 206
IF +E+ Q K+S GE + SP P +R R Y+
Sbjct: 160 IFPWMKESR--QNSKQKNSCATAGESCE----DKSPP----------GPASKRVRTAYTS 203
Query: 207 FQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKE 255
Q +ELEKEF FN YL R RR+E+++ L LTERQ+KIWFQNRRMK+KK+
Sbjct: 204 AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 252
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 95.5 bits (236), Expect = 5e-20
Identities = 74/207 (35%), Positives = 97/207 (46%), Gaps = 33/207 (15%)
Query: 54 YGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPP 113
YG+ G Q A P P+ PP GRG + P S +A AA
Sbjct: 226 YGSGGGG----AQQLGAGPFPAQPP---------GRGFD-LPPALASGSA--DAARKERA 269
Query: 114 HPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDP 173
PPPP CG G + + + AE + S S +
Sbjct: 270 LDSPPPPTLACGS-----------GGGSQGDEEAHASSSAAE--ELSPAPSESSKASPEK 316
Query: 174 DHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHA 233
D L S + W+ A R+ R Y++ QTLELEKEFLFN YLTR+RR+E+S +
Sbjct: 317 DSLGNSKGENAA-NWL---TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372
Query: 234 LALTERQVKIWFQNRRMKWKKENNKDK 260
+ LT+RQVKIWFQNRRMK KK N +++
Sbjct: 373 VHLTDRQVKIWFQNRRMKLKKMNRENR 399
Score = 38.5 bits (88), Expect = 0.007
Identities = 49/179 (27%), Positives = 63/179 (35%), Gaps = 33/179 (18%)
Query: 2 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 61
+S+ V+ L S + A Y H GG + AA L YG + G
Sbjct: 27 NSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH-----GGVYLPPAADLP-YGLQSCGL 80
Query: 62 PHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAP-----------P 110
P + P SG G GG G G H G SP + AP P
Sbjct: 81 --FPTLGGKRNEAASPGSGGGGGGL-GPGA---HGYGPSPIDLWLDAPRSCRMEPPDGPP 134
Query: 111 PPPHPPPPPPPPP---------CGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYP 160
PPP PPPPP P C E + + YD+ + P + AEL +P
Sbjct: 135 PPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCP-KVSATAAELAPFP 192
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 92.8 bits (229), Expect = 3e-19
Identities = 86/271 (31%), Positives = 124/271 (45%), Gaps = 44/271 (16%)
Query: 1 MSSYFVNPLYSKYKAAA----------AAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAA 50
+SSY+V+ + S A A++ G A + + C F P+
Sbjct: 7 LSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKA---------- 56
Query: 51 LQLYGNSAAGF-PHAPPQAHAHPHPSPPPSGTGCGGREGRG-QEYFHPGGGSPAAAYQAA 108
++G S A PHA + HP P G E R + + P AA Q
Sbjct: 57 -PVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPA--ESRYLRTWLEPAPRGEAAPGQGQ 113
Query: 109 PPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGN 168
P P G + G P ++ + R+ + + Q+ Y D K G+
Sbjct: 114 AAVKAEPLLGAP----GELLKQGTP-EYSLETSAGREAVLSNQRPG----YGDNKICEGS 164
Query: 169 IGED-PDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRR 227
++ PD N S++ W+ +++ R+ R Y+++QTLELEKEFLFN YLTR RR
Sbjct: 165 EDKERPDQTNPSAN------WLHARSS---RKKRCPYTKYQTLELEKEFLFNMYLTRDRR 215
Query: 228 IEVSHALALTERQVKIWFQNRRMKWKKENNK 258
EV+ L L+ERQVKIWFQNRRMK KK N +
Sbjct: 216 HEVARLLNLSERQVKIWFQNRRMKMKKMNKE 246
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 91.3 bits (225), Expect = 9e-19
Identities = 85/271 (31%), Positives = 122/271 (45%), Gaps = 37/271 (13%)
Query: 1 MSSYFVNPLYS---------KYKAAAA-AAAAAGEAINPTYYD---CHFAPEVGGRHAAA 47
+S+Y+V+ L S ++ A A AAA + P D C FAP+
Sbjct: 7 ISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA------ 60
Query: 48 AAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQA 107
++ S A P Q+ HP P G R R + P G A ++ +
Sbjct: 61 -----VFSTSWAP---VPSQSSVVYHPYGPQPHLGADTRYMR--TWLEPLSG--AVSFPS 108
Query: 108 APPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG 167
P H P P C + Y D + P + + + P+ + +G
Sbjct: 109 FPAGGRHYALKPDAYPGRRADCGPGEGRSYP-DYMYGSPGELRDRAPQTLPSPEADALAG 167
Query: 168 NIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRR 227
+ ++ S+P + W+ ++ R+ R Y+++QTLELEKEFLFN YLTR RR
Sbjct: 168 SKHKEEKADLDPSNP--VANWIHARST---RKKRCPYTKYQTLELEKEFLFNMYLTRDRR 222
Query: 228 IEVSHALALTERQVKIWFQNRRMKWKKENNK 258
EV+ L LTERQVKIWFQNRRMK KK N +
Sbjct: 223 YEVARVLNLTERQVKIWFQNRRMKMKKMNKE 253
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 90.5 bits (223), Expect = 2e-18
Identities = 86/253 (33%), Positives = 114/253 (45%), Gaps = 40/253 (15%)
Query: 22 AAGEAINPTYYDCHFAPEV-------GGRHAAAAAALQLYGNSAAGFPHAPPQAHAHP-- 72
AA A +P + C F + HAA A A+ AA + H H HP
Sbjct: 42 AATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVP-----AAVYHHH----HHHPYV 92
Query: 73 HPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPP----CGGIA 128
HP P + GR R PG A ++ P P+ P P C +
Sbjct: 93 HPQAPVAAAAPDGRYMRSWLEPTPG----ALSFAGLPSSRPYGIKPEPLSARRGDCPTLD 148
Query: 129 CHGEPAKFYGYDNLQRQPIFTTQQEAE-LVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFP 187
H Y + P+ +Q +E + ++ SG D N +++
Sbjct: 149 THTLSLTDYACGS---PPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAAN------ 199
Query: 188 WMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQN 247
W+ ++ R+ R Y++ QTLELEKEFLFN YLTR RR EV+ L LTERQVKIWFQN
Sbjct: 200 WLHARST---RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 256
Query: 248 RRMKWKKENNKDK 260
RRMK KK NKD+
Sbjct: 257 RRMKMKK-INKDR 268
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 90.1 bits (222), Expect = 2e-18
Identities = 78/236 (33%), Positives = 98/236 (41%), Gaps = 59/236 (25%)
Query: 43 RHAAAAAALQLYGNSAAGFPHAPPQ-------AHAHPHPSPPPS-GTGCGGREGRGQEYF 94
R A+ Q YG A P APPQ +H P P+PP + G + +
Sbjct: 19 RPASLGLGPQAYGPPAP--PPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAY 76
Query: 95 HPGGGSPAA--AYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQ 152
PG +PAA A A PPP P P PP P G+
Sbjct: 77 GPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLL------------------------ 112
Query: 153 EAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRG----------RQ 202
A+ + P SS G P + WMR A G G R
Sbjct: 113 -AQPLGGPGTPSSPGAQRPTP------------YEWMRRSVAAGGGGGSGKTRTKDKYRV 159
Query: 203 TYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNK 258
Y+ Q LELEKEF ++ Y+T +R+ E++ L LTERQVKIWFQNRR K +K N K
Sbjct: 160 VYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK 215
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 90.1 bits (222), Expect = 2e-18
Identities = 72/242 (29%), Positives = 95/242 (39%), Gaps = 18/242 (7%)
Query: 55 GNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPH 114
G G H P HAHP + + G HPGG A A H
Sbjct: 102 GGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGH 161
Query: 115 PPPPPPPPPCGGIACHGEPAKFYGYDNLQ-------RQPIFTTQQEAELVQYPDCKSSSG 167
P PA Y Y +Q PI +L Q+ ++
Sbjct: 162 PVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGM 221
Query: 168 NIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRR 227
+ + PD +Q+ S RR R ++ Q LELE +F N YL+R +R
Sbjct: 222 ILPKMPDFNSQAQS----------NLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKR 271
Query: 228 IEVSHALALTERQVKIWFQNRRMKWKKENN-KDKFPVSRQEVKDGETKKEAQELEEDRAE 286
EV+ +L LTE QVKIWFQNRRMKWK+ K++ ++ K G EE AE
Sbjct: 272 FEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAE 331
Query: 287 GL 288
L
Sbjct: 332 EL 333
Score = 28.1 bits (61), Expect = 9.4
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Query: 2 SSYFVNPLYSKYKAAAAAAAAAGE--AINPTYYDCHFAPEVGGRHAAAAA 49
++ + +P+Y Y AAAAAAA AG+ A++ +Y P+V G H A A
Sbjct: 156 AALYGHPVYG-YSAAAAAAALAGQHPALSYSY------PQVQGAHPAHPA 198
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 89.4 bits (220), Expect = 3e-18
Identities = 67/200 (33%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
Query: 74 PSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEP 133
P PPP + P A A PPPPP P P PP P
Sbjct: 44 PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAP---------- 93
Query: 134 AKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQA 193
F +E + + P ++S + + SP+ P+A
Sbjct: 94 -------------EFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGL--PEA 138
Query: 194 APG-RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKW 252
G RR R Y+ Q LELEKEF FN YL R RR+E++ L LTERQVK+WFQNRRMK
Sbjct: 139 GGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
Query: 253 KKENNKDKFPVSRQEVKDGE 272
K++ +E DGE
Sbjct: 199 KRQ-------TQHREPPDGE 211
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 88.6 bits (218), Expect = 6e-18
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253
A R+ R Y++ QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 17 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 76
Query: 254 KENNKDK 260
K N +++
Sbjct: 77 KMNRENR 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,213,301
Number of Sequences: 37866
Number of extensions: 1319757
Number of successful extensions: 37698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 842
Number of HSP's that attempted gapping in prelim test: 12318
Number of HSP's gapped (non-prelim): 12350
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.