Guide to the Human Genome
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Name: LCA5 Sequence: fasta or formatted (697aa) NCBI GI: 170650670
Description:

Leber congenital amaurosis 5

Referenced in:

Centromere Proteins
Crystallins and Other Eye Proteins

Other entries for this name:
alt mRNA [697aa] Leber congenital amaurosis 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         34           2
 C cysteine            0.4          3           1
 D aspartate           5.6         39           2
 E glutamate          12.5         87           4
 F phenylalanine       3.6         25           2
 G glycine             4.2         29           1
 H histidine           2.4         17           2
 I isoleucine          2.7         19           1
 K lysine             10.3         72           2
 L leucine            10.8         75           2
 M methionine          1.3          9           1
 N asparagine          4.9         34           2
 P proline             4.9         34           1
 Q glutamine           4.9         34           1
 R arginine            7.7         54           2
 S serine              9.8         68           3
 T threonine           3.3         23           1
 V valine              3.6         25           2
 W tryptophan          0.4          3           1
 Y tyrosine            1.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Leber congenital amaurosis 5 
LCA5                  1.000   Leber congenital amaurosis 5 
LCA5L                 0.132   Leber congenital amaurosis 5-like 
LOC283685             0.041   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.038   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CCDC88A               0.036   coiled-coil domain containing 88A isoform 2 
LOC283767             0.035   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.034   golgi autoantigen, golgin subfamily a-like 
KTN1                  0.034   kinectin 1 isoform a 
KTN1                  0.034   kinectin 1 isoform c 
KTN1                  0.034   kinectin 1 isoform a 
TCHH                  0.034   trichohyalin 
CCDC88A               0.034   coiled-coil domain containing 88A isoform 1 
KTN1                  0.033   kinectin 1 isoform b 
GOLGA4                0.033   golgi autoantigen, golgin subfamily a, 4 
LOC440243             0.031   PREDICTED: Putative golgin subfamily A member 6-lik...
AKAP9                 0.031   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.031   A-kinase anchor protein 9 isoform 3 
LOC645202             0.030   PREDICTED: hypothetical protein LOC645202 
SMC1A                 0.030   structural maintenance of chromosomes 1A 
MNS1                  0.030   meiosis-specific nuclear structural 1 
CROCC                 0.030   ciliary rootlet coiled-coil 
GOLGB1                0.029   golgi autoantigen, golgin subfamily b, macrogolgin ...
EIF3A                 0.028   eukaryotic translation initiation factor 3, subunit 1...
KIF20B                0.028   M-phase phosphoprotein 1 
LOC400352             0.027   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.027   PREDICTED: similar to Putative golgin subfamily A m...
ROCK2                 0.027   Rho-associated, coiled-coil containing protein kinas...
DSP                   0.027   desmoplakin isoform I 
MYH11                 0.027   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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