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Search of human proteins with 110347449
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
(419 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 853 0.0
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 441 e-124
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 321 9e-88
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 194 1e-49
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 179 5e-45
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 158 8e-39
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 158 8e-39
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 142 6e-34
gi|148664218 POU transcription factor [Homo sapiens] 140 2e-33
gi|170650730 pituitary specific transcription factor 1 isoform b... 136 4e-32
gi|4505955 pituitary specific transcription factor 1 isoform alp... 136 4e-32
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 134 2e-31
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 134 2e-31
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 133 3e-31
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 125 7e-29
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 124 2e-28
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 99 5e-21
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 99 5e-21
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 78 2e-14
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 78 2e-14
gi|109452587 family with sequence similarity 98, member B isofor... 72 9e-13
gi|119395750 keratin 1 [Homo sapiens] 70 5e-12
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 70 5e-12
gi|73476377 LBXCOR1 homolog [Homo sapiens] 70 5e-12
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 69 6e-12
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 69 6e-12
gi|55956899 keratin 9 [Homo sapiens] 69 8e-12
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 69 8e-12
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 69 8e-12
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 69 8e-12
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 853 bits (2203), Expect = 0.0
Identities = 419/419 (100%), Positives = 419/419 (100%)
Query: 1 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA 60
MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA
Sbjct: 1 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA 60
Query: 61 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEPGDLLDHI 120
LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEPGDLLDHI
Sbjct: 61 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEPGDLLDHI 120
Query: 121 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGG 180
SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGG
Sbjct: 121 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGG 180
Query: 181 GLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQV 240
GLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQV
Sbjct: 181 GLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQV 240
Query: 241 AAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPG 300
AAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPG
Sbjct: 241 AAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPG 300
Query: 301 VGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRT 360
VGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRT
Sbjct: 301 VGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRT 360
Query: 361 SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY 419
SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY
Sbjct: 361 SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY 419
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 441 bits (1133), Expect = e-124
Identities = 255/425 (60%), Positives = 285/425 (67%), Gaps = 93/425 (21%)
Query: 1 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA 60
MM+MNSKQP F MHP L E K+ SLHS SEA+RR CLP P LQ N+F S DE+LLARAEA
Sbjct: 1 MMAMNSKQP-FGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEA 59
Query: 61 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTS-TVPLAH-----HHHHHHHHQALEPG 114
LAAVDI VS GK+HPFKPDATYHTM+SVPCTSTS TVP++H H HH HQ LE G
Sbjct: 60 LAAVDI-VSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLE-G 117
Query: 115 DLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGG 174
DLL+HIS P+L++ G
Sbjct: 118 DLLEHIS-PTLSV---------------------------------------------SG 131
Query: 175 GGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAA 234
G P ++ HPH H+ ++GHL + G+ HP VA H A A
Sbjct: 132 LGAPEHSVMPAQIHPH-HLGAMGHL---------HQAMGMSHPHTVAP---HSAMPAC-- 176
Query: 235 AAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALA 294
+ D ++DPRELEAFAERFKQRRIKLGVTQADVG+ALA
Sbjct: 177 -----------------------LSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALA 213
Query: 295 NLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGE 354
NLKIPGVGSLSQSTICRFESLTLSHNNMIALKP+LQAWLEEAE A REK +KPELFNG E
Sbjct: 214 NLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSE 273
Query: 355 KKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 414
+KRKRTSIAAPEKRSLEAYFA+QPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK
Sbjct: 274 RKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 333
Query: 415 FSATY 419
+SA +
Sbjct: 334 YSAVH 338
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 321 bits (822), Expect = 9e-88
Identities = 199/387 (51%), Positives = 219/387 (56%), Gaps = 88/387 (22%)
Query: 119 HISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGG-----GGGGPGG 173
H+ AL + + G+ A + G GGGGG GGG GGG G G
Sbjct: 21 HVEPKYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSG 80
Query: 174 GGGG----------PGGGLLGG----------------------SAHPHPHMHS------ 195
GGG P + GG S H HP HS
Sbjct: 81 GGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDIVSQSKSHHHHPPHHSPFKPDA 140
Query: 196 LGHLSH--PAAAAAMNMPSGLPHPGLVAAAAHH-------------------------GA 228
H + P +AA + + HP +A HH G
Sbjct: 141 TYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQALEGELLEHLSPGL 200
Query: 229 AAAAAAAAAGQVAAA--------------SAAAAVVGAAGLAS----ICDSDTDPRELEA 270
A A A G V + AA ++ A GL S + D D DPR+LEA
Sbjct: 201 ALGAMAGPDGAVVSTPAHAPHMATMNPMHQAALSMAHAHGLPSHMGCMSDVDADPRDLEA 260
Query: 271 FAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQ 330
FAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQ
Sbjct: 261 FAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQ 320
Query: 331 AWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAE 390
AWLEEAE + REK+ KPELFNG EKKRKRTSIAAPEKRSLEAYFA+QPRPSSEKIAAIAE
Sbjct: 321 AWLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAE 380
Query: 391 KLDLKKNVVRVWFCNQRQKQKRMKFSA 417
KLDLKKNVVRVWFCNQRQKQKRMK+SA
Sbjct: 381 KLDLKKNVVRVWFCNQRQKQKRMKYSA 407
Score = 137 bits (344), Expect = 2e-32
Identities = 83/133 (62%), Positives = 95/133 (71%), Gaps = 30/133 (22%)
Query: 29 SEAIRRACLPTPPLQSNLFASLDETLLARAEALAAVDIAVSQGKSH--------PFKPDA 80
SEA+RRACLPTPP SN+F LDE+LLARAEALAAVDI VSQ KSH PFKPDA
Sbjct: 84 SEAMRRACLPTPP--SNIFGGLDESLLARAEALAAVDI-VSQSKSHHHHPPHHSPFKPDA 140
Query: 81 TYHTMNSVPCT---STSTVPLAH-------HHHHHHH-------HQALEPGDLLDHISSP 123
TYHTMN++PCT S+S+VP++H HHHHHHH HQALE G+LL+H+ SP
Sbjct: 141 TYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQALE-GELLEHL-SP 198
Query: 124 SLALMAGAGGAGA 136
LAL A AG GA
Sbjct: 199 GLALGAMAGPDGA 211
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 194 bits (493), Expect = 1e-49
Identities = 129/314 (41%), Positives = 156/314 (49%), Gaps = 40/314 (12%)
Query: 129 AGAGGAGAAAGGGGA--------HDGPGGGGGPGGGG------GPGGGPGGGGGGG---- 170
AG GG G A GGG H G G G GP P G GG
Sbjct: 95 AGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGPAMSPSPGASGGHQPQ 154
Query: 171 ----------PGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLV 220
PGGGGGG G L G P +H H H A PS PH G
Sbjct: 155 PLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLH---HALHEDGHEAQLEPSPPPHLGAH 211
Query: 221 AAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRI 280
A H A AAAA A + VG SD +LE FA++FKQRRI
Sbjct: 212 GHAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAPSSD----DLEQFAKQFKQRRI 267
Query: 281 KLGVTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGA 339
KLG TQADVG AL L G++ SQ+TICRFE+L LS NM LKP+L WLEE + +
Sbjct: 268 KLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSS 323
Query: 340 QREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVV 399
N ++ G K++KRTSI K +LE++F P+PS+ +I +A+ L L+K VV
Sbjct: 324 SGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVV 383
Query: 400 RVWFCNQRQKQKRM 413
RVWFCN+RQK+KRM
Sbjct: 384 RVWFCNRRQKEKRM 397
Score = 28.9 bits (63), Expect = 9.1
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 170 GPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAA 229
GPGGG GG G P MH + AAAAA + +G + V HH
Sbjct: 11 GPGGGAGGTG-----------PLMHPDAAAAAAAAAAAERLHAGAAYRE-VQKLMHHEWL 58
Query: 230 AAAAAAAAG 238
A A G
Sbjct: 59 GAGAGHPVG 67
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 179 bits (453), Expect = 5e-45
Identities = 126/329 (38%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 104 HHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAH-DGPGGGGGPGGGGGPGGG 162
HH L P H P A A A AAA AH GG P
Sbjct: 165 HHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQ 224
Query: 163 PGG-------GGGGGPGGGGGGPGGG---------LLGGSAHPHPHMHSLGHLSHPAAAA 206
PGG GPGGGGGG GGG + G + H H H +HP
Sbjct: 225 PGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHP-- 282
Query: 207 AMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPR 266
PHP HHG A S D DT
Sbjct: 283 --------PHPHHAQGPPHHGGGGGGAGPGLNSHDPHS---------------DEDTPTS 319
Query: 267 E-LEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIA 324
+ LE FA++FKQRRIKLG TQADVG AL L G++ SQ+TICRFE+L LS NM
Sbjct: 320 DDLEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCK 375
Query: 325 LKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEK 384
LKP+L WLEEA+ + + ++ G K++KRTSI K +LE++F P+PS+++
Sbjct: 376 LKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQE 435
Query: 385 IAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
I +A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 436 ITNLADSLQLEKEVVRVWFCNRRQKEKRM 464
Score = 69.3 bits (168), Expect = 6e-12
Identities = 50/123 (40%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 132 GGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHP 191
G + AAG D G GGG GGGGG GGG GGGGGG G G G
Sbjct: 12 GNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVK 71
Query: 192 HMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVG 251
+ S A AA N L H A H AAAAAAAAAA A++ + + VG
Sbjct: 72 MVQS---DFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVG 128
Query: 252 AAG 254
AG
Sbjct: 129 MAG 131
Score = 42.4 bits (98), Expect = 8e-04
Identities = 44/126 (34%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 114 GDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGG--GP 171
G +L H AL A A AAA P G G G P P GP
Sbjct: 88 GHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGP 147
Query: 172 GGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAA 231
GG L G+A H HL P P HPG AAA AAAA
Sbjct: 148 DVKGGAGRDDLHAGTALHH---RGPPHLGPPPP------PPHQGHPGGWGAAAAAAAAAA 198
Query: 232 AAAAAA 237
AAAAAA
Sbjct: 199 AAAAAA 204
Score = 38.1 bits (87), Expect = 0.015
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 95 TVPLAHHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHD 145
T LA HHHHHHHH P H P GG G A G +HD
Sbjct: 264 TPELAEHHHHHHHHAHPHPPH-PHHAQGPP----HHGGGGGGAGPGLNSHD 309
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 158 bits (400), Expect = 8e-39
Identities = 111/292 (38%), Positives = 140/292 (47%), Gaps = 63/292 (21%)
Query: 144 HDGPGGGGGPGGGGGPGGGPGGGGGG-----------GPGGGGGGPGG----GLLGGSAH 188
H GPG G GG G G GG P G GL
Sbjct: 162 HPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDE 221
Query: 189 PH-----PHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
PH PH HS H P P HPG AHH +
Sbjct: 222 PHHADHHPHPHSHPHQQPPPPPPPQGPPG---HPG-----AHHDPHS------------- 260
Query: 244 SAAAAVVGAAGLASICDSDTDPRE-LEAFAERFKQRRIKLGVTQADVGSALANLKIPGVG 302
D DT + LE FA++FKQRRIKLG TQADVG AL L G
Sbjct: 261 ----------------DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL----YG 300
Query: 303 SL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTS 361
++ SQ+TICRFE+L LS NM LKP+L WLEEA+ + + ++ G K++KRTS
Sbjct: 301 NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTS 360
Query: 362 IAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
I K +LE++F P+PS+++I ++A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 361 IEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 412
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/117 (34%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 148 GGGGGPGGGGGPGGGPGGGGGGGPGGGG---------------GGPGGGLLGGSAHPHPH 192
GGGGG GGGGG GGG GGGG G P GG G L G A H
Sbjct: 69 GGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQH 128
Query: 193 MHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHH--GAAAAAAAAAAGQVAAASAAA 247
P P LV AA+H G A +AAAA + + A+
Sbjct: 129 QQQQQQQQQQQQQQQQQQQQQRP-PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGAS 184
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 154 GGGGGPGGGPGGGGGGGPGGGGGGP 178
GGGGG GGG GGGGGGG GGG G P
Sbjct: 68 GGGGGGGGGGGGGGGGGGGGGDGSP 92
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 158 bits (400), Expect = 8e-39
Identities = 104/245 (42%), Positives = 137/245 (55%), Gaps = 23/245 (9%)
Query: 188 HPHPHM-HSLGHLSHPAAAAAMNMP------SGLP-----HPGL-VAAAAHHGAAAAAAA 234
H PH+ H H +HP A A P SG P PG V+ HG A
Sbjct: 96 HRSPHVAHHSPHTNHPNAWGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPA 155
Query: 235 AAAGQ----VAAASAAAAVVGAAGLASICDSDTDPR-ELEAFAERFKQRRIKLGVTQADV 289
AA+ Q V +G+ D +T ELE FA++FKQRRIKLG TQADV
Sbjct: 156 AASAQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADV 215
Query: 290 GSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPE 348
G AL L G++ SQ+TICRFE L LS NM LKP+L WLEEA+ + + +
Sbjct: 216 GLALGTL----YGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDK 271
Query: 349 LFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQ 408
+ G K++KRTSI K LE +F P+P++++I+++A+ L L+K VVRVWFCN+RQ
Sbjct: 272 IAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQ 331
Query: 409 KQKRM 413
K+KRM
Sbjct: 332 KEKRM 336
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 142 bits (358), Expect = 6e-34
Identities = 110/292 (37%), Positives = 143/292 (48%), Gaps = 36/292 (12%)
Query: 143 AHDGPGGGGGPGGGG---------------GPGGGPGGGGGGGPGGGGGG-----PGGGL 182
A P GGGG G GG GP GGPG G G GPG G P
Sbjct: 10 AFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEF 69
Query: 183 LGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAA 242
GG A+ P + G P + P G G+ + GA+ G V
Sbjct: 70 CGGMAYCGPQV---GVGLVPQGGLETSQPEG--EAGVGVESNSDGASPEPCTVTPGAVKL 124
Query: 243 ASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVG 302
D +ELE FA+ KQ+RI LG TQADVG L L G
Sbjct: 125 EKEKLE----QNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVL----FG 176
Query: 303 SL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQR-EKMNKPELFNGGEKKRKRT 360
+ SQ+TICRFE+L LS NM L+P+LQ W+EEA+ + +++ K E +KRKRT
Sbjct: 177 KVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQA-RKRKRT 235
Query: 361 SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 412
SI + +LE F P+P+ ++I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 236 SIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR 287
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 140 bits (354), Expect = 2e-33
Identities = 78/160 (48%), Positives = 104/160 (65%), Gaps = 9/160 (5%)
Query: 260 DSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSH 319
D +D ELE FA+ FKQRRIKLG TQ DVG A+ L SQ+TI RFE+L LS
Sbjct: 183 DEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISRFEALNLSF 239
Query: 320 NNMIALKPILQAWLEEAEGAQRE-KMNKPELFNG-----GEKKRKRTSIAAPEKRSLEAY 373
NM LKP+L+ WL +AE + + ++ P + G K++KRTSI + +LE
Sbjct: 240 KNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKR 299
Query: 374 FAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
F P+PSSE+I+ IAE+L ++K VVRVWFCN+RQK+KR+
Sbjct: 300 FQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRI 339
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 136 bits (342), Expect = 4e-32
Identities = 80/155 (51%), Positives = 103/155 (66%), Gaps = 13/155 (8%)
Query: 266 RELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGS-LSQSTICRFESLTLSHNNMIA 324
RELE FA FK RRIKLG TQ +VG ALA + GS SQ+TICRFE+L LS N
Sbjct: 156 RELEKFANEFKVRRIKLGYTQTNVGEALAAVH----GSEFSQTTICRFENLQLSFKNACK 211
Query: 325 LKPILQAWLEEAE---GAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPS 381
LK IL WLEEAE EK+ E K+++RT+I+ K +LE +F Q +PS
Sbjct: 212 LKAILSKWLEEAEQVGALYNEKVGANE-----RKRKRRTTISIAAKDALERHFGEQNKPS 266
Query: 382 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFS 416
S++I +AE+L+L+K VVRVWFCN+RQ++KR+K S
Sbjct: 267 SQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTS 301
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 136 bits (342), Expect = 4e-32
Identities = 80/155 (51%), Positives = 103/155 (66%), Gaps = 13/155 (8%)
Query: 266 RELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGS-LSQSTICRFESLTLSHNNMIA 324
RELE FA FK RRIKLG TQ +VG ALA + GS SQ+TICRFE+L LS N
Sbjct: 130 RELEKFANEFKVRRIKLGYTQTNVGEALAAVH----GSEFSQTTICRFENLQLSFKNACK 185
Query: 325 LKPILQAWLEEAE---GAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPS 381
LK IL WLEEAE EK+ E K+++RT+I+ K +LE +F Q +PS
Sbjct: 186 LKAILSKWLEEAEQVGALYNEKVGANE-----RKRKRRTTISIAAKDALERHFGEQNKPS 240
Query: 382 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFS 416
S++I +AE+L+L+K VVRVWFCN+RQ++KR+K S
Sbjct: 241 SQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTS 275
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 134 bits (336), Expect = 2e-31
Identities = 72/161 (44%), Positives = 101/161 (62%), Gaps = 10/161 (6%)
Query: 260 DSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSH 319
+ +D ELE FA+ FKQRRIKLG TQ DVG A+ L SQ+TI RFE+L LS
Sbjct: 280 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISRFEALNLSF 336
Query: 320 NNMIALKPILQAWLEEAEGAQREK-------MNKPELFNGGEKKRKRTSIAAPEKRSLEA 372
NM LKP+L+ WL +AE + +N P + +++KRTSI + +LE
Sbjct: 337 KNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEK 396
Query: 373 YFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
F +P+SE+I IA++L+++K V+RVWFCN+RQK+KR+
Sbjct: 397 SFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRI 437
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 134 bits (336), Expect = 2e-31
Identities = 110/300 (36%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Query: 134 AGAAAGGGGAHDGPGGGGGPGGGGGPGG----------GPGGGGGGGPGGGGGGPGGGLL 183
AG A PGGGG G PG GP GG G GPG G PG +
Sbjct: 2 AGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVG---PGSEVW 58
Query: 184 GGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
G P P+ G +++ + + +P GL + A + + G A+
Sbjct: 59 GIPPCPPPY-ELCGGMAYCGPQVGVGL---VPQGGLETSQPESEAGVGVESNSNG--ASP 112
Query: 244 SAAAAVVGAAGLAS---------ICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALA 294
GA L D +ELE FA+ KQ+RI LG TQADVG L
Sbjct: 113 EPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILG 172
Query: 295 NLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQR-EKMNKPELFNG 352
L G + SQ TICRFE+L LS NM L+P+LQ W+EEA+ + +++ K E
Sbjct: 173 VL----FGKVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQ 228
Query: 353 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 412
+KRKRTSI + +LE F P+P+ + I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 229 A-RKRKRTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKR 286
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 133 bits (335), Expect = 3e-31
Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 13/164 (7%)
Query: 260 DSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSH 319
+ +D ELE FA FKQRRIKLG TQ DVG A+ L SQ+TI RFE+L LS
Sbjct: 179 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISRFEALNLSF 235
Query: 320 NNMIALKPILQAWLEEAEGAQRE-------KMNKPEL-FNG--GEKKRKRTSIAAPEKRS 369
NM LKP+L+ WL +AE + +++ P L F+G G +++KRTSI + +
Sbjct: 236 KNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFA 295
Query: 370 LEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
LE F +P+SE+I IAE+L ++K V+RVWFCN+RQK+KR+
Sbjct: 296 LEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 125 bits (314), Expect = 7e-29
Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
Query: 266 RELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIA 324
+ELE FA+ KQ+RI LG TQADVG L L G + SQ+TICRFE+L LS NM
Sbjct: 49 KELEQFAKLLKQKRITLGYTQADVGLTLGVL----FGKVFSQTTICRFEALQLSFKNMCK 104
Query: 325 LKPILQAWLEEAEGAQR-EKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSE 383
L+P+LQ W+EEA+ + +++ K E +KRKRTSI + +LE F P+P+ +
Sbjct: 105 LRPLLQKWVEEADNNENLQEICKAETLVQA-RKRKRTSIENRVRGNLENLFLQCPKPTLQ 163
Query: 384 KIAAIAEKLDLKKNVVRVWFCNQRQKQKR 412
+I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 164 QISHIAQQLGLEKDVVRVWFCNRRQKGKR 192
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 124 bits (310), Expect = 2e-28
Identities = 73/201 (36%), Positives = 108/201 (53%), Gaps = 6/201 (2%)
Query: 214 LPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAE 273
+P P +V A+ A +A+A + + +V S+ + + E+ FA+
Sbjct: 93 VPQPAVVIASPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAK 152
Query: 274 RFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWL 333
FK RR+ LG+TQ VG AL + P + SQS ICRFE L ++ + LKP+L+ WL
Sbjct: 153 NFKIRRLSLGLTQTQVGQALTATEGP---AYSQSAICRFEKLDITPKSAQKLKPVLEKWL 209
Query: 334 EEAEGAQREKMNKPELFNGGE---KKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAE 390
EAE +E F GGE K+++RTS +L AYF P P+ ++I IA+
Sbjct: 210 NEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAK 269
Query: 391 KLDLKKNVVRVWFCNQRQKQK 411
+L+ + VVRVWFCN+RQ K
Sbjct: 270 ELNYDREVVRVWFCNRRQTLK 290
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 99.4 bits (246), Expect = 5e-21
Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 59/256 (23%)
Query: 195 SLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAG 254
+L HL+H A+ + + P A+++ +++++A + V+ AA V
Sbjct: 428 NLLHLAHSQASMSQS-------PVRQASSSSSSSSSSSALSVGQLVSNPQTAAGEVDGVN 480
Query: 255 LASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICR--- 311
L E+ FA+ FK RR+ LG+TQ VG AL+ + P + SQS ICR
Sbjct: 481 L----------EEIREFAKAFKIRRLSLGLTQTQVGQALSATEGP---AYSQSAICRHTI 527
Query: 312 ---------------------------------FESLTLSHNNMIALKPILQAWLEEAEG 338
FE L ++ + +KP+L+ W+ EAE
Sbjct: 528 LRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEA 587
Query: 339 AQREKMNKPELFNGGE---KKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLK 395
R M F G E K+++RTS L A+F PS +++ IAEKL+
Sbjct: 588 RHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYD 647
Query: 396 KNVVRVWFCNQRQKQK 411
+ VVRVWFCN+RQ K
Sbjct: 648 REVVRVWFCNKRQALK 663
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 99.4 bits (246), Expect = 5e-21
Identities = 88/273 (32%), Positives = 126/273 (46%), Gaps = 50/273 (18%)
Query: 171 PGGGGGGPGGGLLGGSAHPHP-HMHSLGHLSHPAAAAAM-----------------NMPS 212
PG GGGGP G P P + +L LS AA + +P
Sbjct: 14 PGSGGGGPRG--------PMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDVWRIPL 65
Query: 213 G-LPH----------PGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDS 261
G LPH P L A+ A + A G A + + ++ I
Sbjct: 66 GPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIALRSIPKLPPPEDISGIL-- 123
Query: 262 DTDPRELEAFAERFKQRRIKLGVTQADVGSALANL--KIPGVGSLSQSTICRFESLTLSH 319
+EL+ A+ +Q+R+ LG +QADVG A+ L K+ LSQ+TICRFE+ LS
Sbjct: 124 ----KELQQLAKELRQKRLSLGYSQADVGIAVGALFGKV-----LSQTTICRFEAQQLSV 174
Query: 320 NNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPR 379
NM L+P+L+ WL+E E + K E+ K +R S SLE +F P+
Sbjct: 175 ANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPK 234
Query: 380 PSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 412
P+ ++I+ IA L L+K+VVRVWF N+ + R
Sbjct: 235 PTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSR 267
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 77.8 bits (190), Expect = 2e-14
Identities = 43/100 (43%), Positives = 48/100 (48%), Gaps = 24/100 (24%)
Query: 100 HHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGP 159
H+HHHHHH H P+ AG A A+AGG G GGGGP GG
Sbjct: 180 HYHHHHHH--------AAGHHHHPTAGAPGAAGSAAASAGGAGG----AGGGGPASAGGG 227
Query: 160 GGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHL 199
GGG GGGGGGG G GG+ HPH H+ G L
Sbjct: 228 GGGGGGGGGGGAAGA---------GGALHPH---HAAGGL 255
Score = 44.7 bits (104), Expect = 2e-04
Identities = 39/140 (27%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 113 PGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPG 172
P D ++ + S S L G G A A G G G GG G G P
Sbjct: 110 PEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMG-PAAAVVSAVI 168
Query: 173 GGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAA 232
G G + H H H+ GH HP A A S G A G A+A
Sbjct: 169 AAAAAQSGA---GPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAG 225
Query: 233 AAAAAGQVAAASAAAAVVGA 252
G AA GA
Sbjct: 226 GGGGGGGGGGGGGAAGAGGA 245
Score = 38.1 bits (87), Expect = 0.015
Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 18/118 (15%)
Query: 143 AHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGG---GPGGGLLGGSAHPHPHMHSLGHL 199
+H GG G G G G G GG G GP ++
Sbjct: 121 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVI------------ 168
Query: 200 SHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLAS 257
AAAAA + H AA HH A A AAG AA++ A G G AS
Sbjct: 169 ---AAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPAS 223
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 77.8 bits (190), Expect = 2e-14
Identities = 43/100 (43%), Positives = 48/100 (48%), Gaps = 24/100 (24%)
Query: 100 HHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGP 159
H+HHHHHH H P+ AG A A+AGG G GGGGP GG
Sbjct: 180 HYHHHHHH--------AAGHHHHPTAGAPGAAGSAAASAGGAGG----AGGGGPASAGGG 227
Query: 160 GGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHL 199
GGG GGGGGGG G GG+ HPH H+ G L
Sbjct: 228 GGGGGGGGGGGAAGA---------GGALHPH---HAAGGL 255
Score = 44.7 bits (104), Expect = 2e-04
Identities = 39/140 (27%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 113 PGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPG 172
P D ++ + S S L G G A A G G G GG G G P
Sbjct: 110 PEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMG-PAAAVVSAVI 168
Query: 173 GGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAA 232
G G + H H H+ GH HP A A S G A G A+A
Sbjct: 169 AAAAAQSGA---GPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAG 225
Query: 233 AAAAAGQVAAASAAAAVVGA 252
G AA GA
Sbjct: 226 GGGGGGGGGGGGGAAGAGGA 245
Score = 38.1 bits (87), Expect = 0.015
Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 18/118 (15%)
Query: 143 AHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGG---GPGGGLLGGSAHPHPHMHSLGHL 199
+H GG G G G G G GG G GP ++
Sbjct: 121 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVI------------ 168
Query: 200 SHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLAS 257
AAAAA + H AA HH A A AAG AA++ A G G AS
Sbjct: 169 ---AAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPAS 223
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 72.0 bits (175), Expect = 9e-13
Identities = 35/56 (62%), Positives = 35/56 (62%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
G GG G GGGG GGGGG G GG GGG G GGGGG GGG GG GGG GG
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGG 386
Score = 71.6 bits (174), Expect = 1e-12
Identities = 36/56 (64%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGG-GPGGGGGGGPGGGGGGPGGGLLG 184
G GG G GGGG G GGGG G GGG GG G GGGGGGG GGGGGG GG G
Sbjct: 334 GRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQG 389
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/72 (54%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPG--------GGGGGPGG- 180
G GG G GGGG GGGGG GGGGG GGG GGGGGGG G GG GG GG
Sbjct: 343 GGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGR 402
Query: 181 GLLGGSAHPHPH 192
G GG + P+
Sbjct: 403 GGYGGRGYGDPY 414
Score = 68.9 bits (167), Expect = 8e-12
Identities = 35/57 (61%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGG-GGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
G GG G GGGG G GG GG GGG GG GGG GG GGGG GG GG G G GG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGG 395
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/41 (70%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 145 DGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
+G GG GG GGGGG GG GGGGGGG GG GGG GGG GG
Sbjct: 330 EGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGG-GGGWGGG 369
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 69.7 bits (169), Expect = 5e-12
Identities = 35/67 (52%), Positives = 40/67 (59%)
Query: 122 SPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGG 181
S S+++ GG + GGG G GGGG GGGG GGG GGGG GG G GGGG GGG
Sbjct: 73 SKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGG 132
Query: 182 LLGGSAH 188
GG +
Sbjct: 133 GFGGGGY 139
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/71 (53%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 122 SPSLALMAGAG---GAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGP 178
S S+++ G G G G GGGG G GGGG GGGG GGG GG G GG G GGGG
Sbjct: 75 SISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGF 134
Query: 179 GGGLLGGSAHP 189
GGG GG P
Sbjct: 135 GGGGYGGGYGP 145
Score = 59.3 bits (142), Expect = 6e-09
Identities = 36/85 (42%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Query: 121 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGP--------------------GGGGGPG 160
+S S G GG ++ GGGG G GGG G G G G G
Sbjct: 32 TSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFG 91
Query: 161 GGPGGGGGGGPGGGGGGPGGGLLGG 185
GG GGGG GG G GGGG GGG +GG
Sbjct: 92 GGYGGGGFGGGGFGGGGFGGGGIGG 116
Score = 58.9 bits (141), Expect = 8e-09
Identities = 34/72 (47%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 130 GAGGAGAAAGGGGAHDGPGGG--GGPGGGGGPG------------GGPGGGGGGGPGG-- 173
G GG + G GG+ G GGG G GGGGG G GG GGGGGG GG
Sbjct: 544 GGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRG 603
Query: 174 GGGGPGGGLLGG 185
GGG GG +GG
Sbjct: 604 SGGGSSGGSIGG 615
Score = 57.8 bits (138), Expect = 2e-08
Identities = 32/66 (48%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGG-GPGGGGGGPG--------G 180
G+GG+ +GGG G GGGGG G G G G GGG G GGGGGG G G
Sbjct: 526 GSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSG 585
Query: 181 GLLGGS 186
G GGS
Sbjct: 586 GYRGGS 591
Score = 57.8 bits (138), Expect = 2e-08
Identities = 31/60 (51%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGG--GPGGGGGPGGGPGGGGGGGPGGGGG-GPGGGLLGGS 186
G+GG+ +GGG G GGGG G G GG GG GGGG G GG G GGG GGS
Sbjct: 553 GSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGS 612
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/59 (49%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGG-GPGGGPGGGGGGGPGGGGGGPGGGLLGGSA 187
G G G++ G GG G GGGGG G G G GG G GGG G GGGG G G G +
Sbjct: 524 GYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGS 582
Score = 53.1 bits (126), Expect = 5e-07
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 129 AGAGGAGAAAGGGGAHDGP--GGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGL--LG 184
+G GG G + G G+ G GG GG GGG G G GGG GG GG G GG+ G
Sbjct: 568 SGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSG 627
Query: 185 GSA 187
GS+
Sbjct: 628 GSS 630
Score = 52.8 bits (125), Expect = 6e-07
Identities = 28/53 (52%), Positives = 29/53 (54%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGL 182
G GG G GGG G G GG GGGG GGG GGGG G G G P GG+
Sbjct: 100 GGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGGI 152
Score = 52.8 bits (125), Expect = 6e-07
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 132 GGAGAAAGGGGAHDGPGGGGGPGG--GGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSA 187
GG+ + GGGG H G G GG GG GGG G GG G GGG G G G S+
Sbjct: 563 GGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSS 620
Score = 49.7 bits (117), Expect = 5e-06
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 140 GGGAHDGPGGGGGPGGG--GGPGGGPGGGGGGGPGGGGGGPGGGLLG-GSAHPHPHMHSL 196
GGG+ G GGG G GG G GG G GGGGG G G G GG G G
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGG 573
Query: 197 GHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLA 256
GH S+ + +++ G G G + ++ G + +++ V ++G +
Sbjct: 574 GHGSYGSGSSSGGYRGGSGGGG----GGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGGS 629
Query: 257 S 257
S
Sbjct: 630 S 630
Score = 47.0 bits (110), Expect = 3e-05
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 128 MAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGG------GPGGGGGGGPGGGGGGPGGG 181
M+G + +H GGG GGGGG G G GGG G GGGGGG G
Sbjct: 493 MSGECAPNVSVSVSTSHTTISGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSY 552
Query: 182 LLGGSAH 188
GGS++
Sbjct: 553 GSGGSSY 559
Score = 41.2 bits (95), Expect = 0.002
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 128 MAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGG 165
+ G G G +GGGG G GGGG GGG GP PGG
Sbjct: 114 IGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGG 151
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 122 SPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGG 168
S S G+GG G + GG G GG GG G GG GG
Sbjct: 582 SSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGG 628
Score = 33.1 bits (74), Expect = 0.48
Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 154 GGGGGPGGGPGGGGGG-GPGGGGGGPGGGLLGGS 186
GGGGG GGGGG G GGG G LGGS
Sbjct: 40 GGGGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGS 73
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 69.7 bits (169), Expect = 5e-12
Identities = 48/115 (41%), Positives = 51/115 (44%), Gaps = 27/115 (23%)
Query: 130 GAGGAGAAAGGGGAH---DGPGGG----------GGPGGGGGPGGGPGGGGGGGPGGGGG 176
G GG G GGG H +GPGGG GPGGG G G P G GG GGGGG
Sbjct: 737 GRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGG 796
Query: 177 -----GPGGGLLGGSAHPHPHM-------HSLGHLSHPAAAAAMNMPSG-LPHPG 218
GPGGG+ GGS H PH GH H +M G PH G
Sbjct: 797 HRPHEGPGGGISGGSGH-RPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEG 850
Score = 59.7 bits (143), Expect = 5e-09
Identities = 41/102 (40%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGG----GPGGGPGGGGGG----GPGGGGGGPGGG 181
G GG+ GG H+GPGGG G G GPGGG G GGG GPGG GG GG
Sbjct: 786 GPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGH 845
Query: 182 L-LGGSAHPHPHMHS----LGHLSHPAAAAAMNMPSGLPHPG 218
G H PH H GH H + G PG
Sbjct: 846 RPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPG 887
Score = 58.5 bits (140), Expect = 1e-08
Identities = 43/112 (38%), Positives = 45/112 (40%), Gaps = 26/112 (23%)
Query: 132 GGAGAAAGGG--GAHDGPGGGGGPGGGGGPGGGPGGGGGG--------GPGGGGG----- 176
G G +GGG GPGGG GGG P GPGGG G GPGGG G
Sbjct: 724 GARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP 783
Query: 177 --GPGGGLLGGSAHPHPH-------MHSLGHLSHPAAAAAMNMPSG-LPHPG 218
GPGG + GG H PH GH H M G PH G
Sbjct: 784 HEGPGGSMGGGGGH-RPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEG 834
Score = 50.1 bits (118), Expect = 4e-06
Identities = 44/121 (36%), Positives = 47/121 (38%), Gaps = 26/121 (21%)
Query: 123 PSLALMAGAGGAGAAAGGGGAHDGPGGGGG-------PGGGGGPGGGPGGG---GGGGPG 172
P + G G G G H G GG GG P G GG GGG G GGPG
Sbjct: 683 PGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
Query: 173 GG--GG-------GPGGGLLGGSAHPHPHM-----HSLGHLSHPAAAAAMNMPSG-LPHP 217
GG GG GPGGG+ S H PH GH H +M G PH
Sbjct: 743 GGMVGGGGHRPHEGPGGGMGNSSGH-RPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHE 801
Query: 218 G 218
G
Sbjct: 802 G 802
Score = 48.9 bits (115), Expect = 8e-06
Identities = 34/101 (33%), Positives = 36/101 (35%), Gaps = 36/101 (35%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGG--------GPGGGG------ 175
G GG + G H+GPGGG G GGG P GPGG GG GPG GG
Sbjct: 802 GPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRP 861
Query: 176 ----------------------GGPGGGLLGGSAHPHPHMH 194
GPG G G H H H
Sbjct: 862 HDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSH 902
Score = 43.9 bits (102), Expect = 3e-04
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGP--GGGGGGGPGGGGGGPGGGLLGGSA 187
G GG A GG H+GPGG G GG P GP GG G P G G G
Sbjct: 818 GPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPP 877
Query: 188 HPHPHMHSLGH 198
H H GH
Sbjct: 878 HEHRGHDGPGH 888
Score = 40.0 bits (92), Expect = 0.004
Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 28/121 (23%)
Query: 132 GGAGAAAGGGGAHDGPGGG-----GGPGGGGGP----------GG-----GPGGGGGGGP 171
GG G G GPGG GGPGG GP GG GPG GGP
Sbjct: 632 GGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP 691
Query: 172 GGGGGGPGGGLL-------GGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAA 224
GG GPG G GG+ P P G + N G P G+V
Sbjct: 692 MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGG-PGGGMVGGGG 750
Query: 225 H 225
H
Sbjct: 751 H 751
Score = 37.7 bits (86), Expect = 0.020
Identities = 32/91 (35%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 139 GGGGAHDGPGGGGGPG------GGGGPGGGPGGGGGGGPGGGGGGPGGGL--LGGSAHPH 190
G GG+ DG GG P G G G GP G PGGGG L + GS + H
Sbjct: 541 GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG-----PGGGGINVQEILTSIMGSPNSH 595
Query: 191 PHMHSLGHLSHPAAAAAMNMPSGLPHPGLVA 221
P L + M +P GL PG +A
Sbjct: 596 PSEELLKQPDYSDKIKQMLVPHGLLGPGPIA 626
Score = 37.4 bits (85), Expect = 0.026
Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 105 HHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPG 164
H + L+ D D I + + G G G A G PGG GGP G GPG
Sbjct: 595 HPSEELLKQPDYSDKIKQ--MLVPHGLLGPGPIANGFP----PGGPGGPKGMQHFPPGPG 648
Query: 165 GGGGGGPGGGGGGPGGGLLGGSAHP 189
G G GG GG G LLG P
Sbjct: 649 GPMPGPHGGPGGPVGPRLLGPPPPP 673
Score = 33.5 bits (75), Expect = 0.37
Identities = 27/82 (32%), Positives = 28/82 (34%), Gaps = 28/82 (34%)
Query: 128 MAGAGGAGAAAGGGGAHDGPGG---GGGPGGGGGPG------------------------ 160
M GG G GG+ G GG GPG GG G
Sbjct: 823 MGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRG 882
Query: 161 -GGPGGGGGGGPGGGGGGPGGG 181
GPG GGGG G GG GG
Sbjct: 883 HDGPGHGGGGHRGHDGGHSHGG 904
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 69.7 bits (169), Expect = 5e-12
Identities = 46/117 (39%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 139 GGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGG-PGGGGGGPGGGLLGGSAHPHPHMHSLG 197
G G GPG G G GGG G GGG GG G P G G GPGGG + P
Sbjct: 371 GAGEPKGGPGTGSG-GGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAA 429
Query: 198 HLSHPAAAAAM--NMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGA 252
++ AAAA + P P G + ++ A + A A AA AAA+AAAA G+
Sbjct: 430 AVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGS 486
Score = 57.8 bits (138), Expect = 2e-08
Identities = 60/190 (31%), Positives = 64/190 (33%), Gaps = 78/190 (41%)
Query: 133 GAGAAAGGGGAHDGPGGGGGPGGGGG---------------------------------- 158
G G A G GP G GGPGGG G
Sbjct: 303 GLGLATGA----SGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTA 358
Query: 159 ----------------PGGGPG---GGGGGGPGGGGGGPGGGLL--GGSAHPHPHMHSLG 197
P GGPG GGGG G GGG GGPG L G A P G
Sbjct: 359 FGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWG 418
Query: 198 HLSH----------PAAAAAMNMPS---------GLPHPGLVAAAAHHGAAAAAAAAAAG 238
H AAAAA P+ LP P AA + A AAA AAAA
Sbjct: 419 HQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAA 478
Query: 239 QVAAASAAAA 248
AAA+ + A
Sbjct: 479 AAAAAAGSGA 488
Score = 31.6 bits (70), Expect = 1.4
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 146 GPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPG 179
GP G P G G G G GPGG GGG G
Sbjct: 291 GPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAG 324
Score = 29.3 bits (64), Expect = 7.0
Identities = 14/37 (37%), Positives = 14/37 (37%)
Query: 153 PGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHP 189
P GGGP G G G GP GGS P
Sbjct: 639 PSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRP 675
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 69.3 bits (168), Expect = 6e-12
Identities = 52/144 (36%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 129 AGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGP---------- 178
+ + A + G G G GGGG GGGGG G GGGGGG GGG
Sbjct: 142 SSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKSCGS 201
Query: 179 --GGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPG------LVAAAAHHG--- 227
GG GG + PH + G AAAA G L AAA HH
Sbjct: 202 KVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAGAAALLPLGAAADHHSLYK 261
Query: 228 AAAAAAAAAAGQVAAASAAAAVVG 251
A +A+A+A A+ASAA A G
Sbjct: 262 ARTPSASASASSAASASAALAAPG 285
Score = 65.1 bits (157), Expect = 1e-10
Identities = 60/187 (32%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 115 DLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGG 174
D D+ P + +G + ++A G G GGGG GGG GGGG GGG
Sbjct: 122 DYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGG-GGGGSSNAGGG 180
Query: 175 GGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAA 234
GGG GG G ++ P S G A ++ PH L+ A G AAAAA
Sbjct: 181 GGGASGG--GANSKP-AQKKSCGSKVAGGAGGGVSK----PHAKLILAGGGGGGKAAAAA 233
Query: 235 AAAGQVAAASAAAAV-VGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSAL 293
AA+ A AAA + +GAA D L +K R + + SA
Sbjct: 234 AASFAAEQAGAAALLPLGAA---------ADHHSL------YKARTPSASASASSAASAS 278
Query: 294 ANLKIPG 300
A L PG
Sbjct: 279 AALAAPG 285
Score = 30.0 bits (66), Expect = 4.1
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 11/125 (8%)
Query: 113 PGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPG 172
PG L + L G G + + GG GA P G G G P G
Sbjct: 284 PGKHLAEKKVKRVYLFGGLGTSSSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRS 343
Query: 173 GGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAA 232
P G H + + AA PS P +A++H +++++
Sbjct: 344 SAASSPAAG-----------RSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSS 392
Query: 233 AAAAA 237
++++
Sbjct: 393 GSSSS 397
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 69.3 bits (168), Expect = 6e-12
Identities = 37/73 (50%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 122 SPSLALMAGAGGAGAAA------GGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGG 175
SP+ A A A A AAA GGG G GGG G G G G GGG GGGGGG GGG
Sbjct: 454 SPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGG 513
Query: 176 GGPGGGLLGGSAH 188
G GG G S++
Sbjct: 514 SGTAGGHSGLSSN 526
Score = 64.7 bits (156), Expect = 1e-10
Identities = 35/70 (50%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 126 ALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
A A A A AAA H G G G G G GGG GGG G GGGGG GGGGG G G
Sbjct: 457 AAAAAAAAAAAAAAVSAVHRGGGSGSG-GAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSG 515
Query: 186 SAHPHPHMHS 195
+A H + S
Sbjct: 516 TAGGHSGLSS 525
Score = 58.2 bits (139), Expect = 1e-08
Identities = 34/68 (50%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 121 SSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGG-GGGGPGGGGGGPG 179
SS +L+ A A A AAA GGG G GG GGG GGG G GG GGG GG G
Sbjct: 449 SSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGS--GSGGAGGGSGGGSGSGGGGGGAGGGG 506
Query: 180 GGLLGGSA 187
GG GG +
Sbjct: 507 GGSSGGGS 514
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/142 (26%), Positives = 42/142 (29%), Gaps = 45/142 (31%)
Query: 105 HHHHQALEPGDLLDHISSPSLALMAGAGG--------AGAAAGGGGAHDGPGGGGGPGGG 156
HHHH A + L+L A G GA GAH+ G
Sbjct: 20 HHHHSAAAAAAAAAEMQDRELSLAAAQNGFVDSAAAHMGAFKLNPGAHELSPGQSSAFTS 79
Query: 157 GGPGGGPGG-----------------GGGGGP-------------GGGGGGPGGGLLG-- 184
GPG PG G GP G G PGGG G
Sbjct: 80 QGPGAYPGSAAAAAAAAALGPHAAHVGSYSGPPFNSTRDFLFRSRGFGDSAPGGGQHGLF 139
Query: 185 ----GSAHPHPHMHSLGHLSHP 202
G H H H + GHL P
Sbjct: 140 GPGAGGLH-HAHSDAQGHLLFP 160
Score = 34.3 bits (77), Expect = 0.22
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 200 SHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGA 252
S + AA+ S P PGLV+ +A +++ + AAA AAA+AAAA V A
Sbjct: 422 SESSPAASSGYESSTP-PGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSA 473
Score = 33.9 bits (76), Expect = 0.28
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 99 AHHHHHHHHH 108
AHHHHHHHHH
Sbjct: 230 AHHHHHHHHH 239
Score = 30.0 bits (66), Expect = 4.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 82 YHTMNSVPCTSTSTVPLAHHHHHHHH 107
Y MN + + HHHHHHHH
Sbjct: 214 YGPMNMNMGMNMAAAAAHHHHHHHHH 239
Score = 30.0 bits (66), Expect = 4.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 99 AHHHHHHHHH 108
A HHHHHHHH
Sbjct: 229 AAHHHHHHHH 238
Score = 29.6 bits (65), Expect = 5.3
Identities = 19/34 (55%), Positives = 19/34 (55%)
Query: 218 GLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVG 251
G A HH AAAAAAAAA Q S AAA G
Sbjct: 15 GSFARHHHHSAAAAAAAAAEMQDRELSLAAAQNG 48
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 68.9 bits (167), Expect = 8e-12
Identities = 52/161 (32%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 107 HHQALEPGDLLDHISSPSLALMAGAGGAGAA------AGGGGAHDGPGGGGGPGGGGGPG 160
+H LE G S + G GG+G + G GG++ G G GGG GGG G
Sbjct: 454 YHNLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSR 513
Query: 161 GGPGG--GGGGGPGGG-GGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHP 217
GG GG GGG G GGG GGG GGG GG + HS G + + SG +
Sbjct: 514 GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYG 573
Query: 218 G----LVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAG 254
G + HG + + G A+ G G
Sbjct: 574 GGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYG 614
Score = 58.2 bits (139), Expect = 1e-08
Identities = 33/72 (45%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 129 AGAGGAGAAAG--GGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGG----------- 175
+G G +G + G GGG+ G G GGG GGG G GG GG GGG G GG
Sbjct: 546 SGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEE 605
Query: 176 -GGPGGGLLGGS 186
G GGG GGS
Sbjct: 606 ASGSGGGYGGGS 617
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/57 (54%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGG---GPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLL 183
G+ G G A+GGG + G GGG G GGG G G G G GG GG GGG GG GG+L
Sbjct: 93 GSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGGIL 149
Score = 53.1 bits (126), Expect = 5e-07
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 129 AGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
+G G + ++ GGG G GG GGG GG GGG GGG GGG GG G GG
Sbjct: 77 SGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGG 133
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/59 (52%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 132 GGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGG--PGGGGGGPGGGLLGGSAH 188
GG+G GGG G G GG GGG G GG GG GGG G GGG GGG G S+H
Sbjct: 566 GGSGGGYGGGSGSRG-GSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGG-SGKSSH 622
Score = 52.8 bits (125), Expect = 6e-07
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 124 SLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPG-GGGGGPGGGL 182
S + + G G G+ GG + G GG GGG G G G G GGG G G GG GG GGG
Sbjct: 82 SASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGA 141
Query: 183 LGG 185
GG
Sbjct: 142 GGG 144
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/55 (47%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 129 AGAGGAGAAAGGGGAHDGPGG--GGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGG 181
+G G G GG G+ G GG GGG G GG GG GGG GGG G G G
Sbjct: 564 SGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSG 618
Score = 50.4 bits (119), Expect = 3e-06
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 128 MAGAGGAGA-----AAGGGGAHDGPGGGGGPGGGGGPGGGPGGGG----GGGPGGGGGGP 178
+ G GG G+ G GG GGG GGG GG GGG GG GG GGG
Sbjct: 60 VCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGS 119
Query: 179 GGGLLGG 185
GGG GG
Sbjct: 120 GGGFGGG 126
Score = 48.9 bits (115), Expect = 8e-06
Identities = 32/66 (48%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGG---GGPGGGPGGG--GGGGPGGGG----GGPGG 180
G G + GGG G GGG GGG GGG GGG G GG GGG GG GG
Sbjct: 54 GGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGG 113
Query: 181 GLLGGS 186
G GGS
Sbjct: 114 GFGGGS 119
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/59 (49%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGG---PGGGGGGGPGGGGGGPGGGLLGG 185
G+GG +A+ GG GGG G GG GGG GG GGG GG GGG GGG G
Sbjct: 76 GSGGGFSASSLGGGF----GGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSG 130
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/90 (40%), Positives = 39/90 (43%), Gaps = 26/90 (28%)
Query: 121 SSPSLALMAGAGGAGAAAGGG----GAHDGPGGGGGPGG----GGGPGGGP------GGG 166
SS L+ G GG G +GG + GGGG GG G GGG GGG
Sbjct: 7 SSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG 66
Query: 167 G------GGGPGGG------GGGPGGGLLG 184
G GGG GGG GGG GGG G
Sbjct: 67 GSFGYSYGGGSGGGFSASSLGGGFGGGSRG 96
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/75 (42%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 121 SSPSLALMAGAGGAG-----AAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGG-----GGG 170
SS S +G GG G ++ GGG+ G GGG G GGG GGG GGG
Sbjct: 30 SSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGG 89
Query: 171 PGGGGGGPGGGLLGG 185
GGG G GG GG
Sbjct: 90 FGGGSRGFGGASGGG 104
Score = 35.8 bits (81), Expect = 0.074
Identities = 31/77 (40%), Positives = 32/77 (41%), Gaps = 33/77 (42%)
Query: 138 AGGGGAHDGPGGGGGPGG------------GGGPGGG----PGGGGGG-----GPGGG-- 174
+GGGG GGG G GG GGG GGG G GGG G GGG
Sbjct: 14 SGGGG-----GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGS 68
Query: 175 -----GGGPGGGLLGGS 186
GGG GGG S
Sbjct: 69 FGYSYGGGSGGGFSASS 85
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 68.9 bits (167), Expect = 8e-12
Identities = 59/171 (34%), Positives = 65/171 (38%), Gaps = 61/171 (35%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGG------------PGGGGGGGPGG---- 173
GAGG G GGGG G GGGGG G GG G G GGGGGGG GG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Query: 174 ----------GGG---GPGGG-------------------LLGGSAHPHPHMHSLGHL-- 199
GGG GPGGG G + HP +L L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 200 -------SHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
S+ + + PS P P + AAAA AAA GQ AAA
Sbjct: 367 SPSPMMRSYGGSYPEYSSPSAPPPP----PSQPQSQAAAAGAAAGGQQAAA 413
Score = 67.4 bits (163), Expect = 2e-11
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 122 SPSLALMAGAGGAGAAAGGG-----GAHDG--------------PGGGGGPGGGGGPGGG 162
SP + +M A A A A G +H+G PG GGG GGGGG GGG
Sbjct: 202 SPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGG 261
Query: 163 PGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMN-MPSGLPHPGLVA 221
GGGGGGG G GG G + +A G + ++A + S G +
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMM 321
Query: 222 AAAHHGAAAAAAAAAAGQVA 241
G AA+ + AAAG A
Sbjct: 322 MGPGGGGAASLSKAAAGSAA 341
Score = 53.5 bits (127), Expect = 3e-07
Identities = 73/264 (27%), Positives = 83/264 (31%), Gaps = 108/264 (40%)
Query: 99 AHHHHHH----HHHQAL------------------EPGDLLDHISSPSLALMAGAGGA-- 134
AHHHHHH HHH AL + H S + +L GGA
Sbjct: 32 AHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQ 91
Query: 135 --------------GAAAGG-------------GGAHDGPGGGGGPGGGG--GPGGGPGG 165
+AAGG G D P G P GG PG G G
Sbjct: 92 PGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALG 151
Query: 166 ---------GGGGGPGG--------GGGGPGGGLLGGSAHP----HPHMHSLGH-LSHPA 203
GGGGGP G P G GG A P H S G + H A
Sbjct: 152 TQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSA 211
Query: 204 AAAAMNMPSGLP-----HPGLVAAAAHH----------------------------GAAA 230
+AAA P + H G + +H G A
Sbjct: 212 SAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGA 271
Query: 231 AAAAAAAGQVAAASAAAAVVGAAG 254
A A AG VAAA+AAAA G
Sbjct: 272 GAGGAGAGAVAAAAAAAAAAAGGG 295
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 68.9 bits (167), Expect = 8e-12
Identities = 59/171 (34%), Positives = 65/171 (38%), Gaps = 61/171 (35%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGG------------PGGGGGGGPGG---- 173
GAGG G GGGG G GGGGG G GG G G GGGGGGG GG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Query: 174 ----------GGG---GPGGG-------------------LLGGSAHPHPHMHSLGHL-- 199
GGG GPGGG G + HP +L L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 200 -------SHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
S+ + + PS P P + AAAA AAA GQ AAA
Sbjct: 367 SPSPMMRSYGGSYPEYSSPSAPPPP----PSQPQSQAAAAGAAAGGQQAAA 413
Score = 67.4 bits (163), Expect = 2e-11
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 122 SPSLALMAGAGGAGAAAGGG-----GAHDG--------------PGGGGGPGGGGGPGGG 162
SP + +M A A A A G +H+G PG GGG GGGGG GGG
Sbjct: 202 SPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGG 261
Query: 163 PGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMN-MPSGLPHPGLVA 221
GGGGGGG G GG G + +A G + ++A + S G +
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMM 321
Query: 222 AAAHHGAAAAAAAAAAGQVA 241
G AA+ + AAAG A
Sbjct: 322 MGPGGGGAASLSKAAAGSAA 341
Score = 53.5 bits (127), Expect = 3e-07
Identities = 73/264 (27%), Positives = 83/264 (31%), Gaps = 108/264 (40%)
Query: 99 AHHHHHH----HHHQAL------------------EPGDLLDHISSPSLALMAGAGGA-- 134
AHHHHHH HHH AL + H S + +L GGA
Sbjct: 32 AHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQ 91
Query: 135 --------------GAAAGG-------------GGAHDGPGGGGGPGGGG--GPGGGPGG 165
+AAGG G D P G P GG PG G G
Sbjct: 92 PGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALG 151
Query: 166 ---------GGGGGPGG--------GGGGPGGGLLGGSAHP----HPHMHSLGH-LSHPA 203
GGGGGP G P G GG A P H S G + H A
Sbjct: 152 TQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSA 211
Query: 204 AAAAMNMPSGLP-----HPGLVAAAAHH----------------------------GAAA 230
+AAA P + H G + +H G A
Sbjct: 212 SAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGA 271
Query: 231 AAAAAAAGQVAAASAAAAVVGAAG 254
A A AG VAAA+AAAA G
Sbjct: 272 GAGGAGAGAVAAAAAAAAAAAGGG 295
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 68.9 bits (167), Expect = 8e-12
Identities = 59/171 (34%), Positives = 65/171 (38%), Gaps = 61/171 (35%)
Query: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGG------------PGGGGGGGPGG---- 173
GAGG G GGGG G GGGGG G GG G G GGGGGGG GG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Query: 174 ----------GGG---GPGGG-------------------LLGGSAHPHPHMHSLGHL-- 199
GGG GPGGG G + HP +L L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 200 -------SHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
S+ + + PS P P + AAAA AAA GQ AAA
Sbjct: 367 SPSPMMRSYGGSYPEYSSPSAPPPP----PSQPQSQAAAAGAAAGGQQAAA 413
Score = 67.4 bits (163), Expect = 2e-11
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 122 SPSLALMAGAGGAGAAAGGG-----GAHDG--------------PGGGGGPGGGGGPGGG 162
SP + +M A A A A G +H+G PG GGG GGGGG GGG
Sbjct: 202 SPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGG 261
Query: 163 PGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMN-MPSGLPHPGLVA 221
GGGGGGG G GG G + +A G + ++A + S G +
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMM 321
Query: 222 AAAHHGAAAAAAAAAAGQVA 241
G AA+ + AAAG A
Sbjct: 322 MGPGGGGAASLSKAAAGSAA 341
Score = 53.5 bits (127), Expect = 3e-07
Identities = 73/264 (27%), Positives = 83/264 (31%), Gaps = 108/264 (40%)
Query: 99 AHHHHHH----HHHQAL------------------EPGDLLDHISSPSLALMAGAGGA-- 134
AHHHHHH HHH AL + H S + +L GGA
Sbjct: 32 AHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQ 91
Query: 135 --------------GAAAGG-------------GGAHDGPGGGGGPGGGG--GPGGGPGG 165
+AAGG G D P G P GG PG G G
Sbjct: 92 PGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALG 151
Query: 166 ---------GGGGGPGG--------GGGGPGGGLLGGSAHP----HPHMHSLGH-LSHPA 203
GGGGGP G P G GG A P H S G + H A
Sbjct: 152 TQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSA 211
Query: 204 AAAAMNMPSGLP-----HPGLVAAAAHH----------------------------GAAA 230
+AAA P + H G + +H G A
Sbjct: 212 SAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGA 271
Query: 231 AAAAAAAGQVAAASAAAAVVGAAG 254
A A AG VAAA+AAAA G
Sbjct: 272 GAGGAGAGAVAAAAAAAAAAAGGG 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,277,634
Number of Sequences: 37866
Number of extensions: 1423139
Number of successful extensions: 73515
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 496
Number of HSP's that attempted gapping in prelim test: 13353
Number of HSP's gapped (non-prelim): 21767
length of query: 419
length of database: 18,247,518
effective HSP length: 105
effective length of query: 314
effective length of database: 14,271,588
effective search space: 4481278632
effective search space used: 4481278632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.