Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRIM7 Sequence: fasta or formatted (303aa) NCBI GI: 44680124
Description:

tripartite motif-containing 7 isoform 3

Referenced in:

Glycogen
Tripartite Motif Family

Other entries for this name:
alt prot [221aa] tripartite motif-containing 7 isoform 4
alt prot [511aa] tripartite motif-containing 7 isoform 1
alt mRNA [303aa] tripartite motif-containing 7 isoform 3
alt mRNA [303aa] tripartite motif-containing 7 isoform 3
alt prot [329aa] tripartite motif-containing 7 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         18           2
 C cysteine            1.7          5           1
 D aspartate           3.6         11           1
 E glutamate           9.6         29           2
 F phenylalanine       5.0         15           1
 G glycine             6.9         21           2
 H histidine           1.7          5           2
 I isoleucine          1.3          4           1
 K lysine              5.9         18           2
 L leucine            12.2         37           2
 M methionine          1.3          4           1
 N asparagine          3.3         10           1
 P proline             4.6         14           1
 Q glutamine           5.0         15           1
 R arginine            7.3         22           2
 S serine              7.6         23           2
 T threonine           5.3         16           2
 V valine              8.6         26           1
 W tryptophan          2.0          6           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 7 isoform 3 
TRIM7                 1.000   tripartite motif-containing 7 isoform 2 
TRIM7                 1.000   tripartite motif-containing 7 isoform 3 
TRIM7                 1.000   tripartite motif-containing 7 isoform 3 
TRIM7                 1.000   tripartite motif-containing 7 isoform 1 
TRIM27                0.295   ret finger protein 
TRIM39                0.286   tripartite motif-containing 39 isoform 2 
TRIM15                0.269   tripartite motif protein 15 
TRIM39                0.262   tripartite motif-containing 39 isoform 1 
TRIM41                0.262   tripartite motif-containing 41 isoform 1 
TRIM58                0.245   tripartite motif-containing 58 
TRIM11                0.233   tripartite motif-containing 11 
TRIM10                0.233   tripartite motif-containing 10 isoform 1 
MEFV                  0.224   Mediterranean fever protein 
TRIM69                0.214   tripartite motif-containing 69 isoform b 
TRIM69                0.214   tripartite motif-containing 69 isoform a 
TRIML1                0.212   tripartite motif family-like 1 
BTN1A1                0.211   butyrophilin, subfamily 1, member A1 
TRIM21                0.193   tripartite motif protein 21 
ERMAP                 0.193   erythroblast membrane-associated protein precursor [...
ERMAP                 0.193   erythroblast membrane-associated protein precursor [...
BTN2A2                0.187   butyrophilin, subfamily 2, member A2 isoform b [Homo...
BTN2A2                0.187   butyrophilin, subfamily 2, member A2 isoform a 
TRIM75                0.185   tripartite motif-containing 75 
TRIM68                0.183   ring finger protein 137 
TRIM50                0.178   tripartite motif protein 50A 
BTN2A1                0.178   butyrophilin, subfamily 2, member A1 isoform 1 precur...
TRIM38                0.173   tripartite motif-containing 38 
TRIM60                0.171   ring finger protein 129 
BTN3A1                0.170   butyrophilin, subfamily 3, member A1 isoform c [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press