Guide to the Human Genome
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Name: LONRF3 Sequence: fasta or formatted (718aa) NCBI GI: 37622896
Description:

LON peptidase N-terminal domain and ring finger 3 isoform 2

Referenced in:

Ring Finger Proteins
Tetratricopeptide Domains

Other entries for this name:
alt prot [759aa] LON peptidase N-terminal domain and ring finger 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         71           7
 C cysteine            4.2         30           1
 D aspartate           4.5         32           1
 E glutamate           8.9         64           5
 F phenylalanine       2.9         21           2
 G glycine             6.1         44           1
 H histidine           2.5         18           2
 I isoleucine          2.6         19           1
 K lysine              5.7         41           2
 L leucine            10.7         77           2
 M methionine          2.6         19           1
 N asparagine          3.3         24           1
 P proline             6.5         47           4
 Q glutamine           5.2         37           2
 R arginine            7.0         50           2
 S serine              6.5         47           2
 T threonine           3.2         23           2
 V valine              4.7         34           2
 W tryptophan          0.8          6           2
 Y tyrosine            1.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LON peptidase N-terminal domain and ring finger 3 is... 
LONRF3                0.986   LON peptidase N-terminal domain and ring finger 3 is...
LONRF2                0.300   LON peptidase N-terminal domain and ring finger 2 [...
LONRF1                0.266   LON peptidase N-terminal domain and ring finger 1 [H...
TRIM25                0.021   tripartite motif-containing 25 
LNX2                  0.020   ligand of numb-protein X 2 
RNF168                0.020   ring finger protein 168 
HLTF                  0.020   helicase-like transcription factor 
HLTF                  0.020   helicase-like transcription factor 
RNF8                  0.020   ring finger protein 8 isoform 1 
BRCA1                 0.019   breast cancer 1, early onset isoform 2 
BRCA1                 0.019   breast cancer 1, early onset isoform 5 
BRCA1                 0.019   breast cancer 1, early onset isoform 4 
BRCA1                 0.019   breast cancer 1, early onset isoform 1 
TTC12                 0.019   tetratricopeptide repeat domain 12 
STUB1                 0.019   STIP1 homology and U-box containing protein 1 
TRIM35                0.019   tripartite motif-containing 35 isoform 2 
RNF125                0.018   ring finger protein 125 
RFWD2                 0.018   ring finger and WD repeat domain 2 isoform d24 [Homo...
TRIM47                0.018   tripartite motif-containing 47 
TRIM31                0.017   tripartite motif protein 31 
PDZRN3                0.017   PDZ domain containing ring finger 3 
RNF135                0.017   ring finger protein 135 isoform 2 
RNF135                0.017   ring finger protein 135 isoform 1 
RFWD2                 0.017   ring finger and WD repeat domain 2 isoform a 
TRIM65                0.017   tripartite motif-containing 65 
TTC33                 0.017   tetratricopeptide repeat domain 33 
TTC28                 0.017   tetratricopeptide repeat domain 28 
TRIM60                0.017   ring finger protein 129 
STIP1                 0.017   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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