Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FANK1 Sequence: fasta or formatted (345aa) NCBI GI: 148596917
Description:

fibronectin type III and ankyrin repeat domains 1

Referenced in:

Ankyrin Family
Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           2
 C cysteine            2.0          7           1
 D aspartate           5.2         18           1
 E glutamate           6.4         22           3
 F phenylalanine       2.0          7           1
 G glycine             8.1         28           2
 H histidine           3.5         12           2
 I isoleucine          3.2         11           2
 K lysine              7.8         27           3
 L leucine             9.3         32           3
 M methionine          2.6          9           1
 N asparagine          3.5         12           2
 P proline             4.6         16           2
 Q glutamine           3.2         11           1
 R arginine            5.8         20           2
 S serine              7.0         24           2
 T threonine           4.3         15           2
 V valine             11.0         38           2
 W tryptophan          1.7          6           1
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III and ankyrin repeat domains 1 [... 
ANKRD44               0.131   ankyrin repeat domain 44 
ANKRD29               0.124   ankyrin repeat domain 29 
ANKRD28               0.121   ankyrin repeat domain 28 
ANKRD17               0.121   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.121   ankyrin repeat domain protein 17 isoform b 
ANKRD50               0.119   ankyrin repeat domain 50 
ANKRD35               0.119   ankyrin repeat domain 35 
ANK3                  0.118   ankyrin 3 isoform 1 
ANKHD1                0.118   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.118   ankyrin repeat and KH domain containing 1 isoform 2 ...
ANKHD1                0.118   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.118   ANKHD1-EIF4EBP3 protein 
ANK2                  0.115   ankyrin 2 isoform 3 
ANK2                  0.115   ankyrin 2 isoform 2 
ANK2                  0.115   ankyrin 2 isoform 1 
ANKK1                 0.114   ankyrin repeat and kinase domain containing 1 
DAPK1                 0.112   death-associated protein kinase 1 
KIDINS220             0.111   kinase D-interacting substrate of 220 kDa 
TANC1                 0.111   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.111   tetratricopeptide repeat, ankyrin repeat and coiled...
ANK1                  0.111   ankyrin 1 isoform 9 
ANK1                  0.111   ankyrin 1 isoform 1 
ANK1                  0.111   ankyrin 1 isoform 3 
ANK1                  0.111   ankyrin 1 isoform 2 
ANK1                  0.111   ankyrin 1 isoform 4 
ANKRD52               0.109   ankyrin repeat domain 52 
TANC2                 0.109   tetratricopeptide repeat, ankyrin repeat and coiled...
ANKRD6                0.105   ankyrin repeat domain 6 
ANKS3                 0.105   ankyrin repeat and sterile alpha motif domain contai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press