Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TANC1 Sequence: fasta or formatted (1390aa) NCBI GI: 225543463
Description:

tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 isoform 2

Referenced in:

Ankyrin Family
Coiled-Coil Proteins
Tetratricopeptide Domains

Other entries for this name:
alt prot [1861aa] tetratricopeptide repeat, ankyrin repeat and coiled-coil containi...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        123           4
 C cysteine            2.2         31           1
 D aspartate           4.3         60           2
 E glutamate           6.0         83           3
 F phenylalanine       2.8         39           1
 G glycine             6.6         92           2
 H histidine           3.1         43           2
 I isoleucine          3.9         54           2
 K lysine              5.8         81           2
 L leucine            12.2        169           3
 M methionine          1.9         26           1
 N asparagine          3.7         51           2
 P proline             5.1         71           2
 Q glutamine           3.6         50           2
 R arginine            5.5         77           2
 S serine              9.9        138           3
 T threonine           5.3         74           2
 V valine              5.8         81           3
 W tryptophan          1.1         15           1
 Y tyrosine            2.3         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat, ankyrin repeat and coiled... 
TANC1                 0.984   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC2                 0.588   tetratricopeptide repeat, ankyrin repeat and coiled...
ANKRD50               0.106   ankyrin repeat domain 50 
ANKRD17               0.048   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.048   ankyrin repeat domain protein 17 isoform b 
ANKHD1                0.045   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.045   ANKHD1-EIF4EBP3 protein 
ANK2                  0.044   ankyrin 2 isoform 3 
ANK2                  0.044   ankyrin 2 isoform 2 
ANK2                  0.044   ankyrin 2 isoform 1 
ANK3                  0.044   ankyrin 3 isoform 1 
KIDINS220             0.043   kinase D-interacting substrate of 220 kDa 
ANKHD1                0.043   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.043   ankyrin repeat and KH domain containing 1 isoform 2 ...
ANK1                  0.040   ankyrin 1 isoform 9 
ANK1                  0.040   ankyrin 1 isoform 1 
ANK1                  0.040   ankyrin 1 isoform 3 
ANK1                  0.040   ankyrin 1 isoform 2 
ANK1                  0.040   ankyrin 1 isoform 4 
ANKRD28               0.039   ankyrin repeat domain 28 
DAPK1                 0.038   death-associated protein kinase 1 
LOC441869             0.037   hypothetical protein LOC441869 
ANKRD44               0.035   ankyrin repeat domain 44 
ANKRD29               0.033   ankyrin repeat domain 29 
TNKS2                 0.032   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
INVS                  0.032   inversin isoform a 
INVS                  0.032   inversin isoform b 
TNKS                  0.032   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
RIPK4                 0.032   ankyrin repeat domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press