Search of human proteins with 148276981

Search of human proteins with 148276981

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148276981 transmembrane protein 184A [Homo sapiens]
         (413 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148276981 transmembrane protein 184A [Homo sapiens]                840   0.0  
gi|63259329 transmembrane protein 184B [Homo sapiens]                 521   e-148
gi|190358512 transmembrane protein 184C [Homo sapiens]                182   5e-46
gi|40807477 retinoic acid induced 1 [Homo sapiens]                     33   0.47 
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               31   1.8  
gi|56549696 E1A binding protein p400 [Homo sapiens]                    30   4.0  
gi|209915556 cyclin D3 isoform 4 [Homo sapiens]                        30   4.0  
gi|209862835 cyclin D3 isoform 1 [Homo sapiens]                        30   4.0  
gi|209915553 cyclin D3 isoform 3 [Homo sapiens]                        30   4.0  
gi|4502619 cyclin D3 isoform 2 [Homo sapiens]                          30   4.0  
gi|102468717 mediator complex subunit 13 [Homo sapiens]                30   4.0  
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     30   4.0  
gi|116812588 polycystic kidney disease 2-like 2 [Homo sapiens]         30   4.0  
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin...    30   4.0  
gi|32307159 corticotropin releasing hormone receptor 2 [Homo sap...    30   5.2  
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    30   5.2  
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]            29   6.8  
gi|19424128 alkaline ceramidase 1 [Homo sapiens]                       29   6.8  
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    29   6.8  
gi|22218619 WD repeat domain 40A [Homo sapiens]                        29   8.9  
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    29   8.9  
gi|116812579 transmembrane BAX inhibitor motif containing 4 [Hom...    29   8.9  
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         29   8.9  

>gi|148276981 transmembrane protein 184A [Homo sapiens]
          Length = 413

 Score =  840 bits (2170), Expect = 0.0
 Identities = 413/413 (100%), Positives = 413/413 (100%)

Query: 1   MSNVSGILETAGVPLVSANWPQPSPPPAVPAGPQMDHMGNSSQGAPWLFLTSALARGVSG 60
           MSNVSGILETAGVPLVSANWPQPSPPPAVPAGPQMDHMGNSSQGAPWLFLTSALARGVSG
Sbjct: 1   MSNVSGILETAGVPLVSANWPQPSPPPAVPAGPQMDHMGNSSQGAPWLFLTSALARGVSG 60

Query: 61  IFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYYVYF 120
           IFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYYVYF
Sbjct: 61  IFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYYVYF 120

Query: 121 DSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLR 180
           DSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLR
Sbjct: 121 DSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLR 180

Query: 181 FCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYALFL 240
           FCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYALFL
Sbjct: 181 FCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYALFL 240

Query: 241 FYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTL 300
           FYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTL
Sbjct: 241 FYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTL 300

Query: 301 AAGYQNFIICVEMLFASVALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQDIV 360
           AAGYQNFIICVEMLFASVALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQDIV
Sbjct: 301 AAGYQNFIICVEMLFASVALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQDIV 360

Query: 361 QDAIHNFSPAYQHYTQQATHEAPRPGTHPSGGSGGSRKSRSLEKRMLIPSEDL 413
           QDAIHNFSPAYQHYTQQATHEAPRPGTHPSGGSGGSRKSRSLEKRMLIPSEDL
Sbjct: 361 QDAIHNFSPAYQHYTQQATHEAPRPGTHPSGGSGGSRKSRSLEKRMLIPSEDL 413


>gi|63259329 transmembrane protein 184B [Homo sapiens]
          Length = 407

 Score =  521 bits (1343), Expect = e-148
 Identities = 258/400 (64%), Positives = 316/400 (79%), Gaps = 12/400 (3%)

Query: 21  PQPSPPPAVPAGPQMDHMGNSSQGAPW--LFLTSALARGVSGIFVWTALVLTCHQIYLHL 78
           P P+ P    A P +  +   S  A    +FL +  A+ +SG FVWTAL++TCHQIY+HL
Sbjct: 10  PDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHL 69

Query: 79  RSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYYVYFDSVRDCYEAFVIYSFLSL 138
           R Y+ P EQRYI+R+L IVPIYAFDSWLSLL   + QYYVYF +VRDCYEA VIY+FLSL
Sbjct: 70  RCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSL 129

Query: 139 CFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAV 198
           C++YLGGE +IM+EIRGKPI+SSC+YGTCCL G TYSIGFLRFCKQATLQFC+VKP+MAV
Sbjct: 130 CYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAV 189

Query: 199 TTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYALFLFYFTTRELLRPFQPVLKF 258
           +T++LQAFGKY DGDF+V SGYLYVT+IYN SVSLALYALFLFYF TRELL P+ PVLKF
Sbjct: 190 STVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKF 249

Query: 259 LTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTLAAGYQNFIICVEMLFASV 318
             +K+VIFLSFWQG+LLAILE+CG IP++  S    +G GT+AAGYQ+FIICVEM FA++
Sbjct: 250 FMVKSVIFLSFWQGMLLAILEKCGAIPKIH-SARVSVGEGTVAAGYQDFIICVEMFFAAL 308

Query: 319 ALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIHNFSPAYQHYTQQA 378
           ALR+AF  +VYA+K+ ++    APM+SISS ++ET++P DIVQDAIHNFSPAYQ YTQQ+
Sbjct: 309 ALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQS 368

Query: 379 THEAPRPGTHPSGGSGGSRKSRSL------EKRMLIPSED 412
           T E   PG    GG+ G  +S SL      EK +L+ S+D
Sbjct: 369 TLE---PGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDD 405


>gi|190358512 transmembrane protein 184C [Homo sapiens]
          Length = 438

 Score =  182 bits (462), Expect = 5e-46
 Identities = 100/277 (36%), Positives = 153/277 (55%), Gaps = 5/277 (1%)

Query: 58  VSGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYY 117
           ++GIF+   + ++   I  HL  YT P+ Q+ IIR+L +VPIY+ DSW++L   G     
Sbjct: 51  IAGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIALKYPG---IA 107

Query: 118 VYFDSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIG 177
           +Y D+ R+CYEA+VIY+F+     YL      +  I     +       CC         
Sbjct: 108 IYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKHFPPLCCCPPWAMGEV 167

Query: 178 FLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYA 237
            L  CK   LQ+ +V+P   +  +I +  G Y +G+F+  + + Y+ +I N S   A+Y 
Sbjct: 168 LLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVIINNMSQLFAMYC 227

Query: 238 LFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGA 297
           L LFY   +E L P QPV KFL +K V+F+SFWQ +++A+L + GVI E  T     + A
Sbjct: 228 LLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEA 287

Query: 298 GTLAAGYQNFIICVEMLFASVALRYAFPCQVYAEKKE 334
             +A G Q+FIIC+EM  A++A  Y F  + Y ++ E
Sbjct: 288 --VATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEAE 322


>gi|40807477 retinoic acid induced 1 [Homo sapiens]
          Length = 1906

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 20  WPQPSPPPAVPAGPQMDHMGNSSQGAPWLFLTSALA 55
           WP+P  P A+P   Q+D  GN+   +P LF   ++A
Sbjct: 658 WPRPGEPEALPDSLQLDKGGNAKDFSPGLFEDPSVA 693


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 315 FASVALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIHNFSPAYQHY 374
           F  V+    FP  ++ E++   P PP P    SS    T SP    Q       PA+   
Sbjct: 462 FLGVSGEPRFPSHLFLEQRSPPPPPPPPTLLNSSHPVPTQSPLPFTQP-----GPAFNQQ 516

Query: 375 TQQAT--HEAP-RPGTHPSGGSG 394
            QQ     E P RP   P G  G
Sbjct: 517 GQQPVFPRERPVRPALQPPGPVG 539


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 331  EKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIHNFSPAYQHYTQQATHEAPRPGTHPS 390
            +K +  P PP P         ++  PQ   Q  +    P  Q   Q  T  APRPG   +
Sbjct: 2786 QKLQMPPQPPPPQA-------QSAPPQPTAQVQVQTSQPPQQQSPQLTTVTAPRPGALLT 2838

Query: 391  G 391
            G
Sbjct: 2839 G 2839


>gi|209915556 cyclin D3 isoform 4 [Homo sapiens]
          Length = 96

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 330 AEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIH 365
           A +  +SPAP AP  S S G  +T +P D+   AIH
Sbjct: 62  ASQTSSSPAPKAPRGSSSQGPSQTSTPTDVT--AIH 95


>gi|209862835 cyclin D3 isoform 1 [Homo sapiens]
          Length = 211

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 330 AEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIH 365
           A +  +SPAP AP  S S G  +T +P D+   AIH
Sbjct: 177 ASQTSSSPAPKAPRGSSSQGPSQTSTPTDVT--AIH 210


>gi|209915553 cyclin D3 isoform 3 [Homo sapiens]
          Length = 220

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 330 AEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIH 365
           A +  +SPAP AP  S S G  +T +P D+   AIH
Sbjct: 186 ASQTSSSPAPKAPRGSSSQGPSQTSTPTDVT--AIH 219


>gi|4502619 cyclin D3 isoform 2 [Homo sapiens]
          Length = 292

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 330 AEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIH 365
           A +  +SPAP AP  S S G  +T +P D+   AIH
Sbjct: 258 ASQTSSSPAPKAPRGSSSQGPSQTSTPTDVT--AIH 291


>gi|102468717 mediator complex subunit 13 [Homo sapiens]
          Length = 2174

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 6   GILETAGVPLVSANWPQPSPPPAVPAGPQMDHMGNSSQGAP 46
           G+ +T   P     +  P+P P VP+ P  D + + SQ  P
Sbjct: 547 GVTKTPSTPQSQHFYQMPTPDPLVPSKPMEDRIDSLSQSFP 587


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 12  GVPLVSANWPQPSPPPAVPAG--PQMDHMGNSSQGAP 46
           G P    N PQ  PPP  P G  PQ D+   SS+  P
Sbjct: 141 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPP 177



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12 GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
          G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 59 GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNKPQGPP 93



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12  GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
           G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 120 GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNKPQGPP 154



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12  GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
           G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 182 GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNKPQGPP 216



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12  GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
           G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 244 GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNKPQGPP 278



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12  GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
           G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 306 GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNKPQGPP 340



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 12  GVPLVSANWPQPSPPPAVPAG--PQMDHMGNSSQGAP 46
           G P    N PQ  PPP  P G  PQ D+   S++  P
Sbjct: 203 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPP 239


>gi|116812588 polycystic kidney disease 2-like 2 [Homo sapiens]
          Length = 613

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 236 YALFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVET 289
           + +FLF FTT+E       V K    K+  F S W  L L +L  C V     T
Sbjct: 289 FCIFLFVFTTQE-------VKKIKEFKSAYFKSIWNWLELLLLLLCFVAVSFNT 335


>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
           isoform a [Homo sapiens]
          Length = 1749

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 325 PCQVYAEKKENSPAPPAPMQSISSGIR-ETVSPQDIVQDAIHNFSPAYQHYTQQATHEAP 383
           P +  A   E  PA P P    S G+R + + P        H   P     T++   E  
Sbjct: 786 PTKASALPVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRHPPKPPRSKATERPGQEPE 845

Query: 384 RPGTHPSGGSGGS------RKSRSLEKRMLIPSED 412
            PG  P+G            + R  ++R+ +P  D
Sbjct: 846 GPGATPAGERDDQSPDSVPERPRPADRRLCLPCVD 880


>gi|32307159 corticotropin releasing hormone receptor 2 [Homo
           sapiens]
          Length = 411

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 38/205 (18%)

Query: 53  ALARGVSGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLG 112
           AL     G  V  A ++    ++L LRS       R +I   LI      +    LL L 
Sbjct: 116 ALVVNYLGHCVSVAALVAAFLLFLALRSIRC---LRNVIHWNLITTFILRNVMWFLLQLV 172

Query: 113 DHQYY----VYFDSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCC 168
           DH+ +    V+   +   +  FV+ +F  +  +                    C   T  
Sbjct: 173 DHEVHESNEVWCRCITTIFNYFVVTNFFWMFVE-------------------GCYLHTAI 213

Query: 169 LRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGK-YHDGD---FNVRSGYLYVT 224
           +  MTYS   LR C    + +C+  P+     I+  A GK Y++ +   F    G L V 
Sbjct: 214 V--MTYSTERLRKCLFLFIGWCIPFPI-----IVAWAIGKLYYENEQCWFGKEPGDL-VD 265

Query: 225 LIYNASVSLALYALFLFYFTTRELL 249
            IY   + L L   F+F F    +L
Sbjct: 266 YIYQGPIILVLLINFVFLFNIVRIL 290


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12  GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
           G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 221 GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNKPQGPP 255



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 12  GVPLVSANWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
           G P    N PQ P PPP  P GP     GN  QG P
Sbjct: 99  GPPPQGGNQPQGPPPPPGKPQGPP-PQGGNRPQGPP 133


>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 577

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 14  PLVSANWPQPSPPPAVPAGP 33
           P +S  W  PSPPPA+   P
Sbjct: 362 PALSGQWQSPSPPPALAGAP 381


>gi|19424128 alkaline ceramidase 1 [Homo sapiens]
          Length = 264

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 39  GNSSQGAPWLFLTSALARGVS----GIFVWTALVLTCHQIYLHLRSY--TVPQEQRYIIR 92
           GN SQ    +F+T+ ++  +S     +  +    +  H +Y+  + Y  T  +E R++I 
Sbjct: 115 GNRSQFIRLVFITTVVSTLLSFLRPTVNAYALNSIALHILYIVCQEYRKTSNKELRHLIE 174

Query: 93  LLLIVPIYAFDSWLSLLLLGDHQYYVYFDSVRDCYEAFVIYSF 135
           + +++   A  SW+S  LL      ++F  +   +   +  +F
Sbjct: 175 VSVVLWAVALTSWISDRLLCSFWQRIHFFYLHSIWHVLISITF 217


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor
          [Homo sapiens]
          Length = 247

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 19 NWPQ-PSPPPAVPAGPQMDHMGNSSQGAP 46
          N PQ P PPP  P GP     GN SQG P
Sbjct: 45 NQPQRPPPPPGKPQGPP-PQGGNQSQGPP 72


>gi|22218619 WD repeat domain 40A [Homo sapiens]
          Length = 453

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 347 SSGIRETVSPQDIVQDAIHNFS--PAYQHYTQQATHEAPRPGTHP 389
           S G+ E         DA HN S  P Y H T +A  + P+  T+P
Sbjct: 206 SMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNP 250


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 10  TAGVPLVSANWPQPSPPPAVPAGP 33
           T+G P  S   P P+PPPAV + P
Sbjct: 138 TSGAPPGSGPGPTPTPPPAVTSAP 161


>gi|116812579 transmembrane BAX inhibitor motif containing 4 [Homo
           sapiens]
          Length = 238

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 24/183 (13%)

Query: 91  IRLLLIVPIYAFDSWLSLLLLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLGGEGAIM 150
           IR+  +  +Y+  S   LL       ++YF+SVR     FV  S   +    LG  G I 
Sbjct: 30  IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVR----TFVHESPALILLFALGSLGLIF 85

Query: 151 AEIRGK---PIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQ-FCLVKPV-MAVTTIILQA 205
           A I  +   P+    L+G   L  +T ++    +     LQ F L   V   +T   LQ+
Sbjct: 86  ALILNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQS 145

Query: 206 ---FGKYHDGDFNV-----RSGYL------YVTLIYNASVSLALYALFLFYFTTRELLRP 251
              F K+  G F +      SG+L       +  +  A+    L+  F+ Y  T  L+  
Sbjct: 146 KKDFSKFGAGLFALLWILCLSGFLKFFFYSEIMELVLAAAGALLFCGFIIY-DTHSLMHK 204

Query: 252 FQP 254
             P
Sbjct: 205 LSP 207


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 337 PAPPAPMQSISSGIRETVSPQDIVQDAIHNFSPAYQHYTQQATHEAPRPGTHPSGGSGGS 396
           PAPP+P+QS               Q    N+SPA      ++   +P P  +     GG 
Sbjct: 765 PAPPSPVQS---------------QSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGK 809

Query: 397 RKSRSLEKR 405
           +K +  +K+
Sbjct: 810 KKKKKKDKK 818


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,744,182
Number of Sequences: 37866
Number of extensions: 805475
Number of successful extensions: 5843
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5797
Number of HSP's gapped (non-prelim): 53
length of query: 413
length of database: 18,247,518
effective HSP length: 105
effective length of query: 308
effective length of database: 14,271,588
effective search space: 4395649104
effective search space used: 4395649104
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.