Guide to the Human Genome
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Name: ACER1 Sequence: fasta or formatted (264aa) NCBI GI: 19424128
Description:

alkaline ceramidase 1

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         11           1
 C cysteine            1.9          5           1
 D aspartate           3.0          8           2
 E glutamate           4.2         11           1
 F phenylalanine       7.6         20           2
 G glycine             4.2         11           2
 H histidine           2.7          7           1
 I isoleucine          8.0         21           2
 K lysine              1.9          5           1
 L leucine            12.1         32           2
 M methionine          4.2         11           2
 N asparagine          3.0          8           1
 P proline             4.5         12           1
 Q glutamine           2.7          7           1
 R arginine            4.9         13           1
 S serine              9.1         24           2
 T threonine           4.2         11           2
 V valine              7.6         20           2
 W tryptophan          3.8         10           1
 Y tyrosine            6.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alkaline ceramidase 1 
ACER2                 0.354   alkaline ceramidase 2 
ACER3                 0.074   phytoceramidase, alkaline 
PORCN                 0.013   porcupine isoform D 
PORCN                 0.013   porcupine isoform C 
PORCN                 0.013   porcupine isoform B 
PORCN                 0.013   porcupine isoform A 
TMEM8B                0.010   transmembrane protein 8B isoform a 
TMEM8B                0.010   transmembrane protein 8B isoform a 
TMEM184A              0.008   transmembrane protein 184A 
TAS2R10               0.008   taste receptor, type 2, member 10 
OTOP2                 0.008   otopetrin 2 
GRPR                  0.006   gastrin-releasing peptide receptor 
LOC100293905          0.006   PREDICTED: similar to gastrin-releasing peptide rec...
TAF6                  0.006   TBP-associated factor 6 isoform delta 
TAF6                  0.006   TBP-associated factor 6 isoform gamma 
TAF6                  0.006   TBP-associated factor 6 isoform alpha 
TAF6                  0.006   TBP-associated factor 6 isoform alpha 
GPR153                0.006   G protein-coupled receptor 153 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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