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Search of human proteins with 14719402
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14719402 homolog of yeast ribosome biogenesis regulatory
protein RRS1 [Homo sapiens]
(365 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14719402 homolog of yeast ribosome biogenesis regulatory prot... 738 0.0
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 44 3e-04
gi|194018511 keratin 77 [Homo sapiens] 42 0.001
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 41 0.001
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 41 0.001
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 41 0.001
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 41 0.001
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 40 0.003
gi|4507741 twist [Homo sapiens] 40 0.004
gi|148746195 trichohyalin [Homo sapiens] 40 0.004
gi|47132620 keratin 2 [Homo sapiens] 40 0.004
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 39 0.006
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 39 0.007
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 39 0.007
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo... 39 0.010
gi|55956788 nucleolin [Homo sapiens] 38 0.016
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 38 0.016
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 38 0.016
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 38 0.016
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 38 0.016
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 38 0.016
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 38 0.016
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 37 0.021
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 37 0.021
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 37 0.021
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 37 0.021
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 37 0.028
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 37 0.028
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.028
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 37 0.028
>gi|14719402 homolog of yeast ribosome biogenesis regulatory protein
RRS1 [Homo sapiens]
Length = 365
Score = 738 bits (1905), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAE 60
MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAE
Sbjct: 1 MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAE 60
Query: 61 LQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARL 120
LQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARL
Sbjct: 61 LQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARL 120
Query: 121 KGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKE 180
KGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKE
Sbjct: 121 KGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKE 180
Query: 181 RVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLP 240
RVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLP
Sbjct: 181 RVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLP 240
Query: 241 KEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEA 300
KEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEA
Sbjct: 241 KEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEA 300
Query: 301 AKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
AKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG
Sbjct: 301 AKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
Query: 361 GKRRK 365
GKRRK
Sbjct: 361 GKRRK 365
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 43.5 bits (101), Expect = 3e-04
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 313 KGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
+GG G GG+ +GGP +GG GG GG G P GG G QR G
Sbjct: 377 RGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424
Score = 38.5 bits (88), Expect = 0.010
Identities = 25/55 (45%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 311 KRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKG--GQRPGGKR 363
K G GPGG GG + G R+GG GG G G GG R G G R GG R
Sbjct: 451 KPDGPGGGPGGSHMGG--NYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDR 503
Score = 32.7 bits (73), Expect = 0.53
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 304 RKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLG-GKMNS 344
R+ + G +GG +G GG R G +GG +GG G GKM+S
Sbjct: 472 RRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDS 513
Score = 32.3 bits (72), Expect = 0.69
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 315 GRQGPGGKRKGGPPSQGGKRKGGLGGKMNSG---PPGLGGKRKGGQRPGGKRR 364
G+Q GG+ +GG S GG GG G +SG P G GG R G GG R
Sbjct: 209 GQQDRGGRGRGG--SGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDR 259
Score = 32.3 bits (72), Expect = 0.69
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 310 GKRKGGRQGPGGKRKGG-PPSQGGKRKGGLGGKMNSGPPGLGGKRKGG-QRPGGKR 363
G+ +GG G GG GG S GG G GG G G+GG +GG + GG R
Sbjct: 215 GRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGG-RGGRGGMGGSDRGGFNKFGGPR 269
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 306 MSQKGKRKGG-----RQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
MS G GG + G GG G +GG+ +GG GG G G + GG P
Sbjct: 184 MSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGY-NRSSGGYEPR 242
Query: 361 GK 362
G+
Sbjct: 243 GR 244
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 324 KGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
+GG +GG+ +GG G+ G G GG +GG GG
Sbjct: 377 RGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGG 414
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 312 RKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
R+GGR GG +GG +GG R G GG+ GG +GG PG
Sbjct: 472 RRGGR---GGYDRGGYRGRGGDRGGFRGGR--------GGGDRGGFGPG 509
Score = 30.0 bits (66), Expect = 3.4
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 305 KMSQKGKRKGGRQGPGGKRKGGPP----SQGGKRKGGLGGKMNSGPPGLGG---KRKGGQ 357
+ +Q GG G GG G S GG GG G + SG G GG + +GG+
Sbjct: 157 QQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGR 216
Query: 358 RPGG 361
GG
Sbjct: 217 GRGG 220
Score = 29.6 bits (65), Expect = 4.4
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGG-----------KRKGGLGGKMNSGPPGLGGKRK-GGQ 357
G++ G +G GG GG GG R GG GG+ G GG K GG
Sbjct: 209 GQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGP 268
Query: 358 RPGGKR 363
R G R
Sbjct: 269 RDQGSR 274
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 33/225 (14%)
Query: 169 DQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKE----ELGRAMQV 224
D ++ + E +A+ + L + +L AG H ++ + EL R +Q
Sbjct: 332 DSIIDAVRTQYELIAQRSKDEAEALYQTKYQELQITAGRHGDDLKNSKMEIAELNRTVQR 391
Query: 225 AKVSTASVGRFQERLPK---EKVPRGSGKKR----KFQPLFGDFAAEKKNQLELLR---V 274
+ ++V + E++ + RG + K Q L K+ LLR
Sbjct: 392 LQAEISNVKKQIEQMQSLISDAEERGEQALQDAWQKLQDLEEALQQSKEELARLLRDYQA 451
Query: 275 MNSKKPQLDVTRATNKQMREEDQEE-----------AAKRRKMSQKGKRKGGRQ------ 317
M K LDV AT +Q+ E ++ + + ++S G GG
Sbjct: 452 MLGVKLSLDVEIATYRQLLEGEESRMSGELQSHVSISVQNSQVSVNGGAGGGGSYGSGGY 511
Query: 318 --GPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
G GG GG +GG +G GG SG G GG G R G
Sbjct: 512 GGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSGRSG 556
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 276 NSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKG-------KRKGGRQGPGGKRKGGPP 328
N++KP L+ T + D + K +K K KG G GG GG
Sbjct: 19 NTEKPTLNKTEQAGRNALLSDISKGKKLKKTVTNDRSAPILDKPKGAGAGGGGGGFGGGG 78
Query: 329 SQGGKRKGGLGGKMNSG-PPGLGGKRKGG 356
GG GG GG G PPGLGG + G
Sbjct: 79 GFGGGGGGGGGGSFGGGGPPGLGGLFQAG 107
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 276 NSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKG-------KRKGGRQGPGGKRKGGPP 328
N++KP L+ T + D + K +K K KG G GG GG
Sbjct: 19 NTEKPTLNKTEQAGRNALLSDISKGKKLKKTVTNDRSAPILDKPKGAGAGGGGGGFGGGG 78
Query: 329 SQGGKRKGGLGGKMNSG-PPGLGGKRKGG 356
GG GG GG G PPGLGG + G
Sbjct: 79 GFGGGGGGGGGGSFGGGGPPGLGGLFQAG 107
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 41.2 bits (95), Expect = 0.001
Identities = 42/130 (32%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 246 RGSGKKRKFQPL-FGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRR 304
R SGKKR F + F D K L+ +N + V +A ++Q +E Q + R
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE--VRKALSRQEMQEVQSSRSGRG 204
Query: 305 KMSQKGKRKGGR----QGPGGKRKGGPPSQGGKR---------KGGLGGKMNSGPPGLGG 351
G +GG GPG +GG G R GG GG G PG GG
Sbjct: 205 GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGG 264
Query: 352 KRKGGQRPGG 361
R GG GG
Sbjct: 265 GR-GGYGGGG 273
Score = 33.9 bits (76), Expect = 0.24
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 318 GPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
GPGG GG P GG R GG GG G PG G +GG GG
Sbjct: 250 GPGGGNFGGSPGYGGGR-GGYGG----GGPGYG--NQGGGYGGG 286
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 41.2 bits (95), Expect = 0.001
Identities = 42/130 (32%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 246 RGSGKKRKFQPL-FGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRR 304
R SGKKR F + F D K L+ +N + V +A ++Q +E Q + R
Sbjct: 135 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE--VRKALSRQEMQEVQSSRSGRG 192
Query: 305 KMSQKGKRKGGR----QGPGGKRKGGPPSQGGKR---------KGGLGGKMNSGPPGLGG 351
G +GG GPG +GG G R GG GG G PG GG
Sbjct: 193 GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGG 252
Query: 352 KRKGGQRPGG 361
R GG GG
Sbjct: 253 GR-GGYGGGG 261
Score = 33.9 bits (76), Expect = 0.24
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 318 GPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
GPGG GG P GG R GG GG G PG G +GG GG
Sbjct: 238 GPGGGNFGGSPGYGGGR-GGYGG----GGPGYG--NQGGGYGGG 274
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 40.4 bits (93), Expect = 0.003
Identities = 72/325 (22%), Positives = 127/325 (39%), Gaps = 36/325 (11%)
Query: 2 EGQSVEELLAKAE--------QDEAEKLQRITVHKELEL------QFDLGNLLASDRNPP 47
+ Q VE LL++ E Q+E +LQ T+ E Q + N +
Sbjct: 64 KAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQMEQLEQENQQLKEGAAG 123
Query: 48 TGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLP- 106
G+ AGP + EL L +NT L N + L +EA P P P
Sbjct: 124 AGVAQAGPLVDGELLRLQAENTALQKN-VAALQERYGKEAGKFSAVSEGQGDPPGGPAPT 182
Query: 107 --RPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNA 164
P PL LK K++ L+W+++ G + Q +E L ++
Sbjct: 183 VLAPMPLAE----VELKWEMEKEEKRLLWEQLQGLESSK---QAETSRLQEELAKLSEKL 235
Query: 165 DPLEDQFAKRIQAKKERVAKNELNRLRNLARA----HKMQLPSAAGLH---PTGHQSKEE 217
++ F R+Q +KE + + N++ L + HK QL L +QS E
Sbjct: 236 KKKQESFC-RLQTEKETLFNDSRNKIEELQQRKEADHKAQLARTQKLQQELEAANQSLAE 294
Query: 218 LGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNS 277
L Q ++ A+ R L + + + + + + L + A + + L ++ +
Sbjct: 295 LRDQRQGERLEHAAALR---ALQDQVSIQSADAQEQVEGLLAENNALRTSLAALEQIQTA 351
Query: 278 KKPQLDVTRATNKQMREEDQEEAAK 302
K +L++ R + E Q++ A+
Sbjct: 352 KTQELNMLREQTTGLAAELQQQQAE 376
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 39.7 bits (91), Expect = 0.004
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 274 VMNSKKPQLDVTRATNKQMREEDQEEAAKR--RKMSQKGKRKGGRQGPGGKRKG------ 325
V +S D + + +++ + Q + KR RK + GG GPGG G
Sbjct: 5 VSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGD 64
Query: 326 --GPPSQG--GKRKGGLGGKMNSGPPGLGGKRKGGQRP 359
G P+QG GK+ G GG G G GG GG P
Sbjct: 65 EPGSPAQGKRGKKSAGCGG--GGGAGGGGGSSSGGGSP 100
Score = 36.2 bits (82), Expect = 0.047
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 304 RKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLG--GKRKGGQRPGG 361
R+ GKR G ++ + GG GG GG+GG G P G GK+ G GG
Sbjct: 26 RQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRGKKSAGCGGGG 85
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 39.7 bits (91), Expect = 0.004
Identities = 69/333 (20%), Positives = 134/333 (40%), Gaps = 39/333 (11%)
Query: 1 MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAE 60
+E + E K E+ E E+ Q++ +E E + L ++ R E
Sbjct: 610 LEQEERREQRLKREEPEEERRQQLLKSEEQEERRQ--QQLRREQQERREQRLKREEEEER 667
Query: 61 L-QALARDNTQLLINQ-LWQLPTERVEEAIVARLPEPTTRLPRE------KPLPRPRPLT 112
L Q L R++ + Q L + E+ E I +R+P+ +L E K RPR
Sbjct: 668 LEQRLKREHEEERREQELAEEEQEQARERIKSRIPKWQWQLESEADARQSKVYSRPRKQE 727
Query: 113 RWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGN--------A 164
++ + R ++++ L W E R++ ++ RD T +W E
Sbjct: 728 GQRRRQEQEEKRRRRESELQWQEEERAHRQQQEEEQRRDFTWQWQAEEKSERGRQRLSAR 787
Query: 165 DPLEDQFAKRIQAKKER-------VAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEE 217
PL +Q ++++A++ + + E + R R + +L + +E+
Sbjct: 788 PPLREQRERQLRAEERQQREQRFLPEEEEKEQRRRQRREREKELQFL--------EEEEQ 839
Query: 218 LGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNS 277
L R + ++ G L +++ R S ++R+ Q E+K + L +
Sbjct: 840 LQRRERAQQLQEEEDG-----LQEDQERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPA 894
Query: 278 KKPQLDVTRATNKQMREE-DQEEAAKRRKMSQK 309
+ QL + ++ EE +EE KRR+ Q+
Sbjct: 895 LQEQLRKEQQLLQEEEEELQREEREKRRRQEQE 927
Score = 28.9 bits (63), Expect = 7.6
Identities = 51/253 (20%), Positives = 105/253 (41%), Gaps = 38/253 (15%)
Query: 82 ERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWR 141
++ EE ++ PE R REK L + ++ L+ R K++ +W
Sbjct: 967 QQKEEQLLGEEPEKRRRQEREKKYREEEELQQEEE-QLLREEREKRRRQ--------EWE 1017
Query: 142 RRWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNE---LNRLRNLARAHK 198
R++ + +E L+ L+++ +R ++E + + E L R R +
Sbjct: 1018 RQYRKKDELQQEEEQLLREEREKRRLQER--ERQYREEEELQQEEEQLLGEERETRRRQE 1075
Query: 199 MQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQER-----------LPKEKVPRG 247
++ ++ +EEL + + R QER +E++ R
Sbjct: 1076 LERQ---------YRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEEEQLLRE 1126
Query: 248 SGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREED---QEEAAKRR 304
+KR+ Q L + E++ Q E +++ ++P+ + +Q REE+ QEE R
Sbjct: 1127 EREKRRRQELERQYREEEEVQQEEEQLLR-EEPEKRRRQELERQYREEEELQQEEEQLLR 1185
Query: 305 KMSQKGKRKGGRQ 317
+ +K +++ RQ
Sbjct: 1186 EEQEKRRQERERQ 1198
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 39.7 bits (91), Expect = 0.004
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 356
G GGR G GG KGG S GG G GGK +SG GG GG
Sbjct: 566 GGGSGGRYGSGGGSKGGSISGGGYGSG--GGKHSSGGGSRGGSSSGG 610
Score = 30.4 bits (67), Expect = 2.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGGKRKG-GLGGKMNSGPPGLGGKRKGGQRPGG 361
+G GG G G Q G R G G GG ++ G G GG G GG
Sbjct: 524 RGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGG 577
Score = 30.0 bits (66), Expect = 3.4
Identities = 24/52 (46%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
G GG G G GG GG R GG GG G GLGG GG PGG
Sbjct: 99 GSSFGGGSGFSGGGFGGG-GFGGGRFGGFGGP--GGVGGLGG--PGGFGPGG 145
Score = 29.3 bits (64), Expect = 5.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 314 GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPG 348
GG+ GG +GG S GG GG G G G
Sbjct: 593 GGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSG 627
Score = 28.5 bits (62), Expect = 9.9
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 318 GPGGKRKGGPPSQGGKRK---GGLG-GKMNSGPPGLGGKRKGGQRPGG 361
G GG++ G GG GG G G + G G GG KGG GG
Sbjct: 540 GSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSKGGSISGG 587
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 266 KNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQG------- 318
K + + ++ +++ + R ++ +RE+ A + + + +GGR
Sbjct: 260 KTTISVAHLLAARQDLSKILRTSSGSIREKTA--CAINKVLMGRVPDRGGRPNEIEPPPP 317
Query: 319 ---PGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
P KR+ GP Q G R GG GG +S G GG +GG R G
Sbjct: 318 EMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGG 362
Score = 30.4 bits (67), Expect = 2.6
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 307 SQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGK-----MNSGPPGLGGKRKGGQRPGG 361
S G R G QG G +GG G R GG G K + G G GG + GG R G
Sbjct: 346 SSYGGRGGHEQGGGRGGRGG--YDHGGRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSG 403
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 311 KRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKRRK 365
KR+ G Q G R GG GG GG G G G G R GG+ K
Sbjct: 324 KRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGNK 378
Score = 28.5 bits (62), Expect = 9.9
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRK----GGLGGKMNSG-PPGLGGKRKGGQRPGG 361
Q G R GGR G GG +GG + GG GG + G G G K +GG GG
Sbjct: 332 QTGGRGGGRGGYEHSSYGG---RGGHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDGG 387
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 304 RKMSQKGKRK-GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
R +KG + GGR G GG R GG +GG R GG G G G G R GG R G
Sbjct: 160 RPPGEKGPPRGGGRGGRGGGRGGG--GRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 304 RKMSQKGKRK-GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
R +KG + GGR G GG R GG +GG R GG G G G G R GG R G
Sbjct: 160 RPPGEKGPPRGGGRGGRGGGRGGG--GRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
sapiens]
Length = 227
Score = 38.5 bits (88), Expect = 0.010
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 286 RATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSG 345
+ + ++++++ E+A + K K +RKG + GG + G P +GG+ +G G +
Sbjct: 52 KRVEEPLKDKEKPESAGKAKGEGKSERKGKSEMQGGSKTEGKPERGGRAEGE-GEPDSER 110
Query: 346 PPGLGGKRKGGQRPGGKR 363
P G+ + R GKR
Sbjct: 111 EPESEGEPESETRAAGKR 128
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 290 KQMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKR--KGGLGGKMNSGPP 347
K+ E+ + + K K K +GG G GG R GG +GG R +GG GG+ G
Sbjct: 627 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGR-GGFGGRGGGRGGRGGFGGRGRGGFG 685
Query: 348 GLGGKR-----KGGQRPGGKRRK 365
G GG R G +P GK+ K
Sbjct: 686 GRGGFRGGRGGGGDHKPQGKKTK 708
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 37.7 bits (86), Expect = 0.016
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 246 RGSGKKRKFQPL-FGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRR 304
RGSGKKR F + F D + K ++ +N +V +A +KQ
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN--CEVRKALSKQ------------- 184
Query: 305 KMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 356
+M+ + GR G G G GG G GG SG G GG R GG
Sbjct: 185 EMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNF-SGRGGFGGSRGGG 235
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 37.7 bits (86), Expect = 0.016
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 17/178 (9%)
Query: 202 PSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDF 261
P+AA PT +S+ E R+ + + +++S G Q P P S K R G
Sbjct: 507 PAAAAGPPTRKKSRRERKRSGEAKEAASSSSGT-QPAPPAPASPWDSKKHRSRDRKPGSH 565
Query: 262 AAE--KKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRKM-----------SQ 308
A+ ++ R ++++ R R +E+ +RR+ S
Sbjct: 566 ASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSS 625
Query: 309 KGKRKGGRQGPGG---KRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKR 363
+ +R G+ GG K+K S+G KR G K + P G G R +R
Sbjct: 626 RRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTSCGDRDSRRR 683
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.7 bits (86), Expect = 0.016
Identities = 21/55 (38%), Positives = 25/55 (45%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGK 362
Q G + G P GK +G PP G K +G GPP G K + Q P GK
Sbjct: 164 QGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGK 218
Score = 36.6 bits (83), Expect = 0.036
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGK 362
Q G + G P GK +G PP G K +G GPP G K + + P GK
Sbjct: 42 QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 96
Score = 35.4 bits (80), Expect = 0.081
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGG-KRKGGQRPGGK 362
Q G + G P GK +G PP G K +G GPP GG K + + P GK
Sbjct: 225 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 280
Score = 35.0 bits (79), Expect = 0.11
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGK 362
Q G + G P GK +G PP G + +G GPP G K + + P GK
Sbjct: 103 QGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 157
Score = 32.0 bits (71), Expect = 0.90
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 314 GGRQGP---GGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGK 362
G QGP GG + GPP GK + GPP GG + G P GK
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQ---------GPPPQGGNKPQGPPPPGK 76
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKR 363
+G + Q P GK +G PP GG GPP GK +G GG +
Sbjct: 205 QGDKSRSSQSPPGKPQGPPPQ---------GGNQPQGPPPPPGKPQGPPPQGGNK 250
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 314 GGRQGP---GGKRKGGPPSQGGKRKG--GLGGKMNSGPPGLGGKRKGGQRPGGKR 363
G QGP GG + GPP GK +G GG GPP GK +G GG +
Sbjct: 217 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPAQGGSK 270
Score = 30.4 bits (67), Expect = 2.6
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 308 QKGKRKGGRQGPGGKRKGGPP---------SQGGKRKG--GLGGKMNSGPPGLGGKRKGG 356
Q G R G PG K +G PP S GK +G GG GPP GK +G
Sbjct: 124 QGGNRPQGPPPPG-KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 182
Query: 357 QRPGGKR 363
GGK+
Sbjct: 183 PPQGGKK 189
Score = 29.6 bits (65), Expect = 4.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLG--GKMNSGPPGLGGKRKGGQRPGGK 362
Q GK+ G PG K + GPP QG K + GK PP G + +G P GK
Sbjct: 185 QGGKKPQGPPPPG-KPQ-GPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGK 239
Score = 29.3 bits (64), Expect = 5.8
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 309 KGKRKGGRQGPGGKRKGGPP---------SQGGKRKG--GLGGKMNSGPPGLGGKRKGGQ 357
+G K P GK +G PP S GK +G GG GPP GK +G
Sbjct: 63 QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 122
Query: 358 RPGGKR 363
GG R
Sbjct: 123 PQGGNR 128
Score = 29.3 bits (64), Expect = 5.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 308 QKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLG--GKMNSGPPGLGGKRKGGQRPGGK 362
Q G + G PG + GPP QG K + GK PP G + +G P GK
Sbjct: 63 QGGNKPQGPPPPG--KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK 117
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 37.7 bits (86), Expect = 0.016
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 56/230 (24%)
Query: 95 PTTRLPREKPLPRPRPLTRWQQFARLKGIRP--KKKTNLVWDEVS--GQWRRRWGYQRAR 150
P R P EKPLP+PR + K RP ++ DEV +W+RR
Sbjct: 274 PRGRKPAEKPLPKPRG-------RKPKPERPPSSSSSDSDSDEVDRISEWKRR------- 319
Query: 151 DDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPT 210
++ + ++A++ R + EL RLR + K +
Sbjct: 320 -----------------DEARRRELEARRRREQEEELRRLREQEKEEKER---------- 352
Query: 211 GHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLE 270
+ + + G A + + S+ R + K++ +G G+ P D +E + +LE
Sbjct: 353 -RRERADRGEAERGSGGSSGDELREDDEPVKKRGRKGRGRG---PPSSSD--SEPEAELE 406
Query: 271 LLRVMNSKKPQLDVTRATNKQMREE-----DQEEAAKRRKMSQKGKRKGG 315
++KKPQ T K ++E ++++ AK K+ + KR G
Sbjct: 407 REAKKSAKKPQSSSTEPARKPGQKEKRVRPEEKQQAKPVKVERTRKRSEG 456
Score = 31.6 bits (70), Expect = 1.2
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 238 RLPKEK-VPRGSGKKRKFQ----PLFGDFAAEKKNQL-ELLRVMNSKKPQLDVTRATNKQ 291
R P EK +P+ G+K K + D +++ +++ E R +++ +L+ R ++
Sbjct: 277 RKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISEWKRRDEARRRELEARRRREQE 336
Query: 292 -----MREEDQEEAAKRRKMSQKGKRKGGRQGPGGK--RKGGPPSQGGKRKGGLGGKMNS 344
+RE+++EE +RR+ + +G+ + G G G R+ P + RKG
Sbjct: 337 EELRRLREQEKEEKERRRERADRGEAERGSGGSSGDELREDDEPVKKRGRKG-----RGR 391
Query: 345 GPP 347
GPP
Sbjct: 392 GPP 394
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 37.7 bits (86), Expect = 0.016
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 304 RKMSQKGKRKGG--RQGP-GGKRKGGPPSQGGKRKG--GLGGKMNSGPPGLGGKRKGGQ 357
R S G+ G R P GG G PS+GG+ G G MNSGPP G R GG+
Sbjct: 1276 RSSSLDGEHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGR 1334
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGGKRKGGLG 339
+G R G G G GPP +G R GG G
Sbjct: 1305 RGGRSGSNWGRGSNMNSGPPRRGASRGGGRG 1335
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 315 GRQGPGGKR-KGGPPS----QGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKR 363
G QGP G R GPP QGG G+ G ++ GP +G +G Q P G R
Sbjct: 739 GMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPL-MGLNPRGMQGPPGPR 791
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 37.7 bits (86), Expect = 0.016
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 56/230 (24%)
Query: 95 PTTRLPREKPLPRPRPLTRWQQFARLKGIRP--KKKTNLVWDEVS--GQWRRRWGYQRAR 150
P R P EKPLP+PR + K RP ++ DEV +W+RR
Sbjct: 274 PRGRKPAEKPLPKPRG-------RKPKPERPPSSSSSDSDSDEVDRISEWKRR------- 319
Query: 151 DDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPT 210
++ + ++A++ R + EL RLR + K +
Sbjct: 320 -----------------DEARRRELEARRRREQEEELRRLREQEKEEKER---------- 352
Query: 211 GHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLE 270
+ + + G A + + S+ R + K++ +G G+ P D +E + +LE
Sbjct: 353 -RRERADRGEAERGSGGSSGDELREDDEPVKKRGRKGRGRG---PPSSSD--SEPEAELE 406
Query: 271 LLRVMNSKKPQLDVTRATNKQMREE-----DQEEAAKRRKMSQKGKRKGG 315
++KKPQ T K ++E ++++ AK K+ + KR G
Sbjct: 407 REAKKSAKKPQSSSTEPARKPGQKEKRVRPEEKQQAKPVKVERTRKRSEG 456
Score = 31.6 bits (70), Expect = 1.2
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 238 RLPKEK-VPRGSGKKRKFQ----PLFGDFAAEKKNQL-ELLRVMNSKKPQLDVTRATNKQ 291
R P EK +P+ G+K K + D +++ +++ E R +++ +L+ R ++
Sbjct: 277 RKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISEWKRRDEARRRELEARRRREQE 336
Query: 292 -----MREEDQEEAAKRRKMSQKGKRKGGRQGPGGK--RKGGPPSQGGKRKGGLGGKMNS 344
+RE+++EE +RR+ + +G+ + G G G R+ P + RKG
Sbjct: 337 EELRRLREQEKEEKERRRERADRGEAERGSGGSSGDELREDDEPVKKRGRKG-----RGR 391
Query: 345 GPP 347
GPP
Sbjct: 392 GPP 394
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 37.4 bits (85), Expect = 0.021
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 48/210 (22%)
Query: 158 IEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEE 217
++VPG P+ DQ+ K + ++ R K E ++ R + + + PT +S E+
Sbjct: 713 LKVPGL--PMSDQYVKLEEERRHR-QKLEKDKRRKKRKEKEKKGKRRHSSLPT--ESDED 767
Query: 218 LGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQP-------LFGDFAAEKKNQLE 270
+ A QV V+ E +P+ +P K P L A +K ++
Sbjct: 768 IAPAQQVDIVT--------EEMPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQ 819
Query: 271 LLR-VMNSKKPQLDVTRATNKQMR-----------EEDQEEAAKRRKMSQ---------- 308
R SK P+ DV K + E D+E+ ++ K
Sbjct: 820 KHRNTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKKKKHRK 879
Query: 309 ------KGKRKGGRQGPGGKRKGGPPSQGG 332
KGK+K +Q PG + G P Q G
Sbjct: 880 EKEERTKGKKKSKKQPPGSEEAAGEPVQNG 909
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 37.4 bits (85), Expect = 0.021
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 262 AAEKKNQLELLRVM----NSKKPQLD--VTRATNKQMREEDQEEAAKRRKMSQKGKRKGG 315
A +KN+ + R + KK +L+ A K E + A + K +R G
Sbjct: 23 ALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVESEKNLGPSRRSPG 82
Query: 316 RQGPGGKRKGG--PPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKRR 364
P G KGG PP QGG+ G + G P G + +GG G RR
Sbjct: 83 TPRPPGASKGGRTPPQQGGRAGMGRASRSWEGSP--GEQPRGGGAGGRGRR 131
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 37.4 bits (85), Expect = 0.021
Identities = 21/43 (48%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 314 GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 356
G GPGG GG P GG GG GG GP G GG GG
Sbjct: 142 GAHDGPGG---GGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGG 181
Score = 30.8 bits (68), Expect = 2.0
Identities = 21/43 (48%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 314 GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 356
GG GPGG GGP GG GG GG G G GG GG
Sbjct: 148 GGGGGPGGG--GGP---GGGPGGGGGGGPGGGGGGPGGGLLGG 185
Score = 30.4 bits (67), Expect = 2.6
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPG--LGG 351
G GG G GG GGP GG GG GG GP G LGG
Sbjct: 146 GPGGGGGPGGGGGPGGGPGGGGGGGPGGGGG----GPGGGLLGG 185
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
G G GG GP GG GG G G G GG GG PGG
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGG-GPGGGPGGGGGGGPGGGGGGPGG 180
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 315 GRQGPGGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKGGQRPGGKR 363
GR GG + GPP + GK +G GG + GPP GK +G GG +
Sbjct: 59 GRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQ 109
Score = 37.4 bits (85), Expect = 0.021
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 312 RKGGRQGP---GGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKGGQRPGGKR 363
R G +GP GG + GPP + GK +G GG + GPP GK +G GG +
Sbjct: 74 RPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 130
Score = 37.4 bits (85), Expect = 0.021
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 312 RKGGRQGP---GGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKGGQRPGGKR 363
R G +GP GG + GPP + GK +G GG + GPP GK +G GG +
Sbjct: 116 RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 172
Score = 37.0 bits (84), Expect = 0.028
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 312 RKGGRQGP---GGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKGGQRPGGKR 363
R G +GP GG + GPP + GK +G GG + GPP GK +G GG +
Sbjct: 137 RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQ 193
Score = 36.6 bits (83), Expect = 0.036
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 314 GGRQGP---GGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKGGQRPGGKR 363
G +GP GG + GPP + GK +G GG + GPP GK +G GG +
Sbjct: 181 GKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNK 235
Score = 35.8 bits (81), Expect = 0.062
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 315 GRQGPGGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKGGQRPGGKR 363
G+ GG + GPP + GK +G GG + GPP GK +G GG +
Sbjct: 101 GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 151
Score = 32.0 bits (71), Expect = 0.90
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 298 EEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGG--LGGKMNSGPPGLGGKRKG 355
E+ ++ S + GR+ GG + P GK +G GG + GPP GK +G
Sbjct: 21 EDVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG 80
Query: 356 GQRPGGKR 363
GG +
Sbjct: 81 PPPQGGNQ 88
Score = 29.3 bits (64), Expect = 5.8
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 312 RKGGRQGP---GGKRKGGPPSQGGKRKG---GLGGKMNSGPPGLGGKRKGGQRPGG 361
R G +GP GG + GPP GK +G G K PP G+ +G PGG
Sbjct: 221 RPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPP--PGRPQGPPPPGG 274
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 37.0 bits (84), Expect = 0.028
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 309 KGKRKGGRQGPGGKR--------KGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
+G G R G GG R +GG GG R GG GG + G G GG R GG G
Sbjct: 509 RGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGG--GYGGDRGGGY--G 564
Query: 361 GKR 363
G R
Sbjct: 565 GDR 567
Score = 36.6 bits (83), Expect = 0.036
Identities = 24/51 (47%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
G R GG G GG R GG GG R GG GG G G G GG R G
Sbjct: 436 GDRSGG--GYGGDRSGG--GYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGG 482
Score = 36.2 bits (82), Expect = 0.047
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGK 362
+G R G R G GG R GG GG R G G + G GG R GG G +
Sbjct: 405 RGGRGGDRGGYGGDRSGG--GYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR 456
Score = 35.0 bits (79), Expect = 0.11
Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG---QRPGG 361
G R GG G GG R G G + GG GG + G G GG R GG R GG
Sbjct: 417 GDRSGG--GYGGDRSSGGGYSGDRSGGGYGGDRSGG--GYGGDRGGGYGGDRGGG 467
Score = 34.7 bits (78), Expect = 0.14
Identities = 27/58 (46%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSG----PPGLGGKRKGGQRPGGKR 363
G R GG G GG R GG GG R GG GG G G GG R GG GG R
Sbjct: 445 GDRSGG--GYGGDRGGG---YGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGY--GGDR 495
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGG----KRKGGLGGKMNSGPPGLGGKRK---GGQRPGG 361
+G G R G GG R G +GG + +GG GG G G GG R GG R GG
Sbjct: 495 RGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGS-GYGGDRSGGYGGDRSGG 553
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 309 KGKRKGG-RQGPGGKRKGGPPSQG--GKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKR 363
+G GG R G GG R G +G G +GG GG + G G GG R GG GG R
Sbjct: 487 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRG--GYGGDRGGGSGYGGDR 542
Score = 30.8 bits (68), Expect = 2.0
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 309 KGKRKGGRQGPGGK--RKGGPPSQGGKRKGG-LGGKMNSGPPGLGGKRK----GGQRPGG 361
+G+ GG +G G+ R G GG R GG GG +SG G G R GG R GG
Sbjct: 392 RGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSG-GGYSGDRSGGGYGGDRSGG 450
Score = 30.8 bits (68), Expect = 2.0
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQ------GGKRKGGLGGKMNSGPPGLGGKRKG 355
G +GG G GG R GG GG R GG GG G GGK G
Sbjct: 529 GGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRG----GYGGKMGG 576
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 37.0 bits (84), Expect = 0.028
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 309 KGKRKGGRQGPGGKR--------KGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
+G G R G GG R +GG GG R GG GG + G G GG R GG G
Sbjct: 512 RGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGG--GYGGDRGGGY--G 567
Query: 361 GKR 363
G R
Sbjct: 568 GDR 570
Score = 36.6 bits (83), Expect = 0.036
Identities = 24/51 (47%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
G R GG G GG R GG GG R GG GG G G G GG R G
Sbjct: 439 GDRSGG--GYGGDRSGG--GYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGG 485
Score = 36.2 bits (82), Expect = 0.047
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGK 362
+G R G R G GG R GG GG R G G + G GG R GG G +
Sbjct: 408 RGGRGGDRGGYGGDRSGG--GYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR 459
Score = 35.0 bits (79), Expect = 0.11
Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG---QRPGG 361
G R GG G GG R G G + GG GG + G G GG R GG R GG
Sbjct: 420 GDRSGG--GYGGDRSSGGGYSGDRSGGGYGGDRSGG--GYGGDRGGGYGGDRGGG 470
Score = 34.7 bits (78), Expect = 0.14
Identities = 27/58 (46%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSG----PPGLGGKRKGGQRPGGKR 363
G R GG G GG R GG GG R GG GG G G GG R GG GG R
Sbjct: 448 GDRSGG--GYGGDRGGG---YGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGY--GGDR 498
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 309 KGKRKGGRQGPGGKRKGGPPSQGG----KRKGGLGGKMNSGPPGLGGKRK---GGQRPGG 361
+G G R G GG R G +GG + +GG GG G G GG R GG R GG
Sbjct: 498 RGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGS-GYGGDRSGGYGGDRSGG 556
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 309 KGKRKGG-RQGPGGKRKGGPPSQG--GKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKR 363
+G GG R G GG R G +G G +GG GG + G G GG R GG GG R
Sbjct: 490 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRG--GYGGDRGGGSGYGGDR 545
Score = 30.8 bits (68), Expect = 2.0
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 309 KGKRKGGRQGPGGK--RKGGPPSQGGKRKGG-LGGKMNSGPPGLGGKRK----GGQRPGG 361
+G+ GG +G G+ R G GG R GG GG +SG G G R GG R GG
Sbjct: 395 RGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSG-GGYSGDRSGGGYGGDRSGG 453
Score = 30.8 bits (68), Expect = 2.0
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQ------GGKRKGGLGGKMNSGPPGLGGKRKG 355
G +GG G GG R GG GG R GG GG G GGK G
Sbjct: 532 GGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRG----GYGGKMGG 579
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.0 bits (84), Expect = 0.028
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 313 KGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
KG R PG K +GGPP G GG G GP G+ G+R PG
Sbjct: 824 KGERGAPGEKGEGGPPGVAGP-PGGSGPAGPPGPQGVKGERGSPGGPG 870
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 319 PGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
PG K G P + G+R GG GG GPPG G+ G Q P G
Sbjct: 581 PGPKGNDGAPGKNGER-GGPGGPGPQGPPGKNGE-TGPQGPPG 621
Score = 33.9 bits (76), Expect = 0.24
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 307 SQKGKRKGGRQGPGGKR----KGGPPSQGGKR-----KGGLGGKMNSGPPGLGGKRKGGQ 357
S G G+ GP G + + GPP G R G G K N G PG G+R G
Sbjct: 541 SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG 600
Query: 358 RPG 360
PG
Sbjct: 601 GPG 603
Score = 33.1 bits (74), Expect = 0.40
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 313 KGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGK--RKGGQRPGG 361
K G GP G G P + GGK G G+ GPPGL G +GG P G
Sbjct: 655 KPGEPGPKGDA-GAPGAPGGKGDAGAPGER--GPPGLAGAPGLRGGAGPPG 702
Score = 32.0 bits (71), Expect = 0.90
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 312 RKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
+ G R GPGG GPP + G+ G + GP G GG + PG
Sbjct: 592 KNGERGGPGGPGPQGPPGKNGET----GPQGPPGPTGPGGDKGDTGPPG 636
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 319 PGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
PG + G P G+R G G K GPPG+ G GG P G
Sbjct: 812 PGAPGQNGEPGGKGER-GAPGEKGEGGPPGVAGP-PGGSGPAG 852
Score = 29.3 bits (64), Expect = 5.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 313 KGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRP 359
+G PG + GPP G GG + G+GG++ GG P
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAP 1218
Score = 28.9 bits (63), Expect = 7.6
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 315 GRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGG 361
G +GP G+R G P G R G G G PG G R PGG
Sbjct: 501 GEKGPAGER--GAPGPAGPR-GAAGEPGRDGVPGGPGMRGMPGSPGG 544
Score = 28.9 bits (63), Expect = 7.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 295 EDQEEAAKRRKMSQKGKRKGGRQG----PGGKRKGGPPSQGGKR--KGGLGGKMNSGPPG 348
++ E K + + K +GG G PGG GPP G + +G GG +G PG
Sbjct: 817 QNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPG 876
Query: 349 LGG 351
G
Sbjct: 877 ARG 879
Score = 28.5 bits (62), Expect = 9.9
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 313 KGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPG 360
KG + PGG G P + G R G G GP G G + G PG
Sbjct: 740 KGDKGEPGGPGADGVPGKDGPR-GPTGPIGPPGPAGQPGDKGEGGAPG 786
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 37.0 bits (84), Expect = 0.028
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 321 GKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRPGGKR 363
G+ GGP +Q G GGL + + P G GG GG PGG+R
Sbjct: 62 GRSGGGPAAQSGGDGGGLPRRAGAEPGGRGG-GSGGTMPGGRR 103
Score = 30.8 bits (68), Expect = 2.0
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 310 GKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQR 358
G+ GG G GG P + G GG GG G GG GG+R
Sbjct: 62 GRSGGGPAAQSGGDGGGLPRRAGAEPGGRGG-------GSGGTMPGGRR 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,002,833
Number of Sequences: 37866
Number of extensions: 975884
Number of successful extensions: 7741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 385
Number of HSP's that attempted gapping in prelim test: 5439
Number of HSP's gapped (non-prelim): 2144
length of query: 365
length of database: 18,247,518
effective HSP length: 104
effective length of query: 261
effective length of database: 14,309,454
effective search space: 3734767494
effective search space used: 3734767494
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.