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Search of human proteins with 14249398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249398 PHD-finger 5A [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249398 PHD-finger 5A [Homo sapiens] 245 5e-66
gi|143770880 laminin, beta 4 [Homo sapiens] 35 0.017
gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens] 33 0.049
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 0.11
gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo s... 30 0.32
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 29 0.93
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 29 0.93
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 28 1.2
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 28 1.2
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 28 1.2
gi|50301234 J-type co-chaperone HSC20 [Homo sapiens] 28 1.2
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 28 1.6
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 28 1.6
gi|37675280 ajuba isoform 2 [Homo sapiens] 28 1.6
gi|14249622 ajuba isoform 1 [Homo sapiens] 28 1.6
gi|21264602 laminin alpha 5 [Homo sapiens] 28 1.6
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 28 1.6
gi|20336246 proprotein convertase subtilisin/kexin type 5 prepro... 28 2.1
gi|13375636 PR domain containing 14 [Homo sapiens] 28 2.1
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 27 2.7
gi|116517328 G-protein coupled receptor 115 [Homo sapiens] 27 2.7
gi|7705708 hypothetical protein LOC51066 [Homo sapiens] 27 2.7
gi|67782324 transforming growth factor, beta receptor II isoform... 27 3.5
gi|67782326 transforming growth factor, beta receptor II isoform... 27 3.5
gi|45269133 glial cells missing homolog a [Homo sapiens] 27 3.5
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 27 3.5
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens] 27 3.5
gi|145275213 coagulation factor XII precursor [Homo sapiens] 27 4.6
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi... 27 4.6
gi|193804862 synaptotagmin-like 4 [Homo sapiens] 27 4.6
>gi|14249398 PHD-finger 5A [Homo sapiens]
Length = 110
Score = 245 bits (626), Expect = 5e-66
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60
MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60
Query: 61 CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct: 61 CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 34.7 bits (78), Expect = 0.017
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 2 AKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSY 54
AK H + C+ ++G C + G+C +P + R CD C+ GSY
Sbjct: 760 AKLHDGAVACKCHPQGSVGSSCSRLGGQC-----QCKPLVVGRCCDRCSTGSY 807
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 20 GRLCEKCD-----GKCVICDSYVR--PCTLV---RICDECN---YGSYQGRCVIC 61
GR C+ CD + CD PC L + C EC YG GRC+ C
Sbjct: 1074 GRGCQSCDCDPRTSQSSHCDQLTGQCPCKLGYGGKRCSECQENYYGDPPGRCIPC 1128
>gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]
Length = 2527
Score = 33.1 bits (74), Expect = 0.049
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 22 LCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKD 81
LC KC K V D Y++ L R CD+ N S C++ G + A Q +
Sbjct: 694 LCCKCFAK-VAMDDYLKNVMLERACDQNN--SIMVECLLLLGADANQAKEGSSLICQVCE 750
Query: 82 RDGCPKIV----NLGSSKTDL 98
++ PK+V N GS + D+
Sbjct: 751 KESSPKLVELLLNSGSREQDV 771
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 23/93 (24%)
Query: 6 PDLIFCRKQAGVAIGRLCEKCD--GKCVICDS------YVRPC-----------TLVRIC 46
P+L K I + C C G + C S Y PC TL +C
Sbjct: 155 PELCGVDKAIFSGISQRCSHCTRLGASIPCRSPGCPRLYHFPCATASGSFLSMKTLQLLC 214
Query: 47 DECNYGSY---QGRCVICGGPG-VSDAYYCKEC 75
E + G+ + RC +C GPG + D ++C C
Sbjct: 215 PEHSEGAAYLEEARCAVCEGPGELCDLFFCTSC 247
>gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo
sapiens]
Length = 512
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 23 CEKCDGKCVICDSYVRPCTLVRICDECN----YGSYQGRCVICGGPGVSDAYYCKECTIQ 78
CE+C K +C+ +C E + + S+ C C D YY T
Sbjct: 441 CERCQAKGFVCE----------LCREGDVLFPFDSHTSVCADCSAVFHRDCYYDNSTT-- 488
Query: 79 EKDRDGCPKIVNLGSSKTDLFYE 101
CPK L K LF E
Sbjct: 489 ------CPKCARLSLRKQSLFQE 505
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 21/75 (28%)
Query: 18 AIGRLCEKCDGKCVI--------CD---------SYVRPCTLVRICDECNYGSYQGRCVI 60
A+ LCEK G+C+ CD RPC DECN ++ G C+
Sbjct: 838 ALSSLCEKTSGQCLCRTGAFGLRCDRCQRGQWGFPSCRPCVCNGHADECN--THTGACLG 895
Query: 61 CGGPGVSDAYYCKEC 75
C + +C+ C
Sbjct: 896 CRDH--TGGEHCERC 908
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 28.9 bits (63), Expect = 0.93
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 76 TIQEKDRDGCPKIVNLGSSKTDL 98
T+Q KDRDG P++V +G ++++
Sbjct: 2126 TVQYKDRDGRPQVVRVGGEESEV 2148
Score = 28.9 bits (63), Expect = 0.93
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 76 TIQEKDRDGCPKIVNLGSSKTDL 98
T+Q KDRDG P++V +G ++++
Sbjct: 2442 TVQYKDRDGRPQVVRVGGEESEV 2464
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 76 TIQEKDRDGCPKIVNLGSSKTDL 98
T+Q KDRDG P+ V +G ++++
Sbjct: 1403 TVQYKDRDGRPRAVRVGGKESEV 1425
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 76 TIQEKDRDGCPKIVNLGSSKT 96
T+Q KDRDG P+ V +G ++
Sbjct: 2553 TVQYKDRDGRPQAVRVGGQES 2573
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 76 TIQEKDRDGCPKIVNLGSSKTDL 98
T+Q KDRDG P++V + ++++
Sbjct: 2981 TVQYKDRDGRPQVVRVRGEESEV 3003
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 76 TIQEKDRDGCPKIVNLGSSKTDL 98
T+Q KDRDG P++V + ++++
Sbjct: 3195 TVQYKDRDGQPQVVRVRGEESEV 3217
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 23 CEKCDGKCVICDS----------YVRPCTLVRICDECNYG--------SYQGRCVICGGP 64
C+ CD C CD ++ + VR C YG S C C GP
Sbjct: 75 CKACDSNCSSCDQNGCYWCEEGFFLLGGSCVRKCGPGFYGDQEMGECESCHRACETCTGP 134
Query: 65 GVSDAYYCKE 74
G + C+E
Sbjct: 135 GHDECSSCQE 144
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 11 CRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY 70
C +I C+ G C+IC +P T R C+ C G Y G V DA
Sbjct: 867 CNDNLDFSIPGSCDSLSGSCLIC----KPGTTGRYCELCADG-YFGDAV--------DAK 913
Query: 71 YCKEC 75
C+ C
Sbjct: 914 NCQPC 918
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 11 CRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY 70
C +I C+ G C+IC +P T R C+ C G Y G V DA
Sbjct: 867 CNDNLDFSIPGSCDSLSGSCLIC----KPGTTGRYCELCADG-YFGDAV--------DAK 913
Query: 71 YCKEC 75
C+ C
Sbjct: 914 NCQPC 918
>gi|50301234 J-type co-chaperone HSC20 [Homo sapiens]
Length = 235
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 46 CDECNY-GSYQGRCVICGGP---GVSDAYYCKEC 75
CD + GS RC CGGP G D ++C +C
Sbjct: 28 CDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQC 61
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 23 CEKCDGKCVICDS----------YVRPCTLVRICDECNYG--------SYQGRCVICGGP 64
C+ CD C CD ++ + VR C YG S C C GP
Sbjct: 75 CKACDSNCGSCDQNGCYWCEEGFFLLGGSCVRKCGPGFYGDQEMGECESCHRACETCTGP 134
Query: 65 GVSDAYYCKE 74
G + C+E
Sbjct: 135 GHDECSSCQE 144
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 23 CEKCDGKCVICDS----------YVRPCTLVRICDECNYG--------SYQGRCVICGGP 64
C+ CD C CD ++ + VR C YG S C C GP
Sbjct: 75 CKACDSNCGSCDQNGCYWCEEGFFLLGGSCVRKCGPGFYGDQEMGECESCHRACETCTGP 134
Query: 65 GVSDAYYCKE 74
G + C+E
Sbjct: 135 GHDECSSCQE 144
>gi|37675280 ajuba isoform 2 [Homo sapiens]
Length = 121
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 25/82 (30%)
Query: 29 KCVICDSYVR--PCTL----VRICDECNYGSYQGRCVICGGP-----GVSD--------- 68
+C++C+ + P T+ C + +Y +C CG P G D
Sbjct: 11 RCIVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDR 70
Query: 69 -----AYYCKECTIQEKDRDGC 85
Y+C++C +Q D +GC
Sbjct: 71 DYHFECYHCEDCRMQLSDEEGC 92
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 25/82 (30%)
Query: 29 KCVICDSYVR--PCTL----VRICDECNYGSYQGRCVICGGP-----GVSD--------- 68
+C++C+ + P T+ C + +Y +C CG P G D
Sbjct: 428 RCIVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDR 487
Query: 69 -----AYYCKECTIQEKDRDGC 85
Y+C++C +Q D +GC
Sbjct: 488 DYHFECYHCEDCRMQLSDEEGC 509
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 21/59 (35%)
Query: 21 RLCEKCDGKCV-----------ICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSD 68
RLC++ G+C+ +C C + C+ECN C GPG+ +
Sbjct: 1489 RLCDELTGQCICPPRTIPPDCLLCQPQTFGCHPLVGCEECN----------CSGPGIQE 1537
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 22 LCEKCDGKCV------ICDSYVRPCTLVRICDECNYGSYQGRCVI-------CGGPGVSD 68
LCE+C + + D + + IC + N S+ R V+ CG G
Sbjct: 164 LCEECSERIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRP 223
Query: 69 AYYCKEC 75
YCK C
Sbjct: 224 VRYCKRC 230
>gi|20336246 proprotein convertase subtilisin/kexin type 5
preproprotein [Homo sapiens]
Length = 913
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 22 LCEKCDGKCVICDSYVRPCTLVRICDECNYG-SYQG-RC-VICGGPGVSDAYYCKEC--- 75
LC KC C + CT C EC G S QG RC V C + C+ C
Sbjct: 736 LCRKCSENC-------KTCTEFHNCTECRDGLSLQGSRCSVSCEDGRYFNGQDCQPCHRF 788
Query: 76 --TIQEKDRDGC 85
T DGC
Sbjct: 789 CATCAGAGADGC 800
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 29 KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCP-K 87
+CV C +++R + G +C CG S A + K+ DGC
Sbjct: 490 QCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCS 549
Query: 88 IVNLGSSKTDLFYERKKY 105
I S + FY K+
Sbjct: 550 ICGKIFSDQETFYSHMKF 567
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 5 HPDLIFCRKQAGVAIGRLCEKC---------DGKCVICDSYVRPCT-----LVRICDECN 50
HP+ C + A G CE C G C P T R C+
Sbjct: 1573 HPETGACSQCQHNAAGEFCELCAPGYYGDATAGTPEDCQPCACPLTNPENMFSRTCESLG 1632
Query: 51 YGSYQGRCVICGGPGVSDAYYCKEC 75
G Y RC C PG + YC++C
Sbjct: 1633 AGGY--RCTAC-EPGYT-GQYCEQC 1653
>gi|116517328 G-protein coupled receptor 115 [Homo sapiens]
Length = 695
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 20 GRLCEKCDGKCVICDSYVRPC 40
GR+ EKC+G C+ + +PC
Sbjct: 46 GRIQEKCEGPCISSSNCSQPC 66
>gi|7705708 hypothetical protein LOC51066 [Homo sapiens]
Length = 353
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 23 CEKCDG----KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCK 73
C C G +C C R R C C GS + RC C G G CK
Sbjct: 166 CSGCHGAGTVRCPSCCGAKRKAKQSRRCQLCA-GSGRRRCSTCSGRGNKTCATCK 219
>gi|67782324 transforming growth factor, beta receptor II isoform
B precursor [Homo sapiens]
Length = 567
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 7 DLIFCRKQAGVAIGRLCEKCDGKCVICD---SYVRPCTLVRICDE 48
D+I V +LC+ CD + CD S + C++ IC++
Sbjct: 35 DMIVTDNNGAVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEK 79
>gi|67782326 transforming growth factor, beta receptor II isoform A
precursor [Homo sapiens]
Length = 592
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 7 DLIFCRKQAGVAIGRLCEKCDGKCVICD---SYVRPCTLVRICDE 48
D+I V +LC+ CD + CD S + C++ IC++
Sbjct: 60 DMIVTDNNGAVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEK 104
>gi|45269133 glial cells missing homolog a [Homo sapiens]
Length = 436
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 4 HHPDLIFCRKQAGVAI-GRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG 62
+H I + GV + GR C +G+ + Y+RP ICD+ + RC C
Sbjct: 66 NHNSRILKKSCLGVVVCGRDCLAEEGRKI----YLRPA----ICDKARQKQQRKRCPNCD 117
Query: 63 GP 64
GP
Sbjct: 118 GP 119
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 40 CTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDG 84
C +C+ C + GR ++C +S YC + +Q + G
Sbjct: 1004 CLECTVCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGG 1048
>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
Length = 1918
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 5 HPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRC 58
H + C G+ G L KC KC PC C C G + RC
Sbjct: 1410 HSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCP--GSCHSCFEGRFHERC 1461
>gi|145275213 coagulation factor XII precursor [Homo sapiens]
Length = 615
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 14 QAGVAIGRLCEKCDGKCVICDSYVRPCTL 42
Q +A+ RL E DG C + YV+P L
Sbjct: 459 QHDLALLRLQEDADGSCALLSPYVQPVCL 487
>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
Length = 354
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 51 YGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNL 91
YG YQGR + GG + + T+++ R C I L
Sbjct: 105 YGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEVIEGL 145
>gi|193804862 synaptotagmin-like 4 [Homo sapiens]
Length = 671
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 44 RICDEC--NYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDG----CPKIVNLGSSKTD 97
R C C + G + C G + C++C IQE + C K + L + D
Sbjct: 61 RTCARCQESLGRLSPKTNTCRG---CNHLVCRDCRIQESNGTWRCKVCAKEIELKKATGD 117
Query: 98 LFYERKKYGFKKR 110
FY++K F R
Sbjct: 118 WFYDQKVNRFAYR 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.144 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,206,785
Number of Sequences: 37866
Number of extensions: 248537
Number of successful extensions: 710
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 95
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.