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Search of human proteins with 14210522
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14210522 microtubule-associated protein 1 light chain 3
alpha isoform a [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 245 7e-66
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 218 9e-58
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 205 8e-54
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 201 8e-53
gi|169183885 PREDICTED: similar to microtubule-associated protei... 176 4e-45
gi|169179756 PREDICTED: similar to microtubule-associated protei... 176 4e-45
gi|169180155 PREDICTED: similar to microtubule-associated protei... 176 4e-45
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 142 5e-35
gi|239755918 PREDICTED: similar to microtubule-associated protei... 134 2e-32
gi|239750436 PREDICTED: similar to microtubule-associated protei... 134 2e-32
gi|239744738 PREDICTED: similar to microtubule-associated protei... 134 2e-32
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 99 8e-22
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 81 2e-16
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 73 6e-14
gi|38261969 APG12 autophagy 12-like [Homo sapiens] 31 0.25
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 29 0.74
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 28 2.2
gi|31542319 epsilon subunit of coatomer protein complex isoform ... 27 2.8
gi|40805827 epsilon subunit of coatomer protein complex isoform ... 27 2.8
gi|40805825 epsilon subunit of coatomer protein complex isoform ... 27 2.8
gi|153791466 AMIGO protein [Homo sapiens] 27 2.8
gi|7019323 dolichyl-phosphate beta-glucosyltransferase isoform 1... 26 6.3
gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo... 26 6.3
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 26 6.3
gi|115511057 hypothetical protein LOC256643 [Homo sapiens] 26 6.3
gi|9506931 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens] 26 8.2
gi|55770834 centromere protein F [Homo sapiens] 26 8.2
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 245 bits (625), Expect = 7e-66
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
Query: 121 F 121
F
Sbjct: 121 F 121
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 218 bits (555), Expect = 9e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 14 ADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQL 73
ADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQL
Sbjct: 18 ADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQL 77
Query: 74 NPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
NPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF
Sbjct: 78 NPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 125
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 205 bits (521), Expect = 8e-54
Identities = 99/120 (82%), Positives = 111/120 (92%)
Query: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI+++YE EKDEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 201 bits (512), Expect = 8e-53
Identities = 98/120 (81%), Positives = 110/120 (91%)
Query: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI+++YE EKDEDGFLYMV ASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 176 bits (446), Expect = 4e-45
Identities = 88/121 (72%), Positives = 105/121 (86%), Gaps = 3/121 (2%)
Query: 2 PSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+++ FKQRR+F R +V+ I++QHP+K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 33 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 91
Query: 60 MSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETF 119
MSEL+KIIRRRLQLN QAF L+VN HSMVSVSTP++++YE EKDEDGFLYMVYASQET+
Sbjct: 92 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 151
Query: 120 G 120
G
Sbjct: 152 G 152
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 176 bits (446), Expect = 4e-45
Identities = 88/121 (72%), Positives = 105/121 (86%), Gaps = 3/121 (2%)
Query: 2 PSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+++ FKQRR+F R +V+ I++QHP+K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 60 MSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETF 119
MSEL+KIIRRRLQLN QAF L+VN HSMVSVSTP++++YE EKDEDGFLYMVYASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 120 G 120
G
Sbjct: 372 G 372
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 176 bits (446), Expect = 4e-45
Identities = 88/121 (72%), Positives = 105/121 (86%), Gaps = 3/121 (2%)
Query: 2 PSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+++ FKQRR+F R +V+ I++QHP+K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 60 MSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETF 119
MSEL+KIIRRRLQLN QAF L+VN HSMVSVSTP++++YE EKDEDGFLYMVYASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 120 G 120
G
Sbjct: 372 G 372
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 142 bits (359), Expect = 5e-35
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
+PS RPFKQR+S A R +EV IR + P+KIPV++ERY E LP LDKTKFLVP + M
Sbjct: 7 IPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTM 66
Query: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
++ + IIR R+ L T+AF+LLVN S+VS+S +A+IY KDEDGF+YM YASQETFG
Sbjct: 67 TQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 134 bits (336), Expect = 2e-32
Identities = 66/85 (77%), Positives = 74/85 (87%)
Query: 36 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 95
+RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP
Sbjct: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
Query: 96 ADIYEQEKDEDGFLYMVYASQETFG 120
+++YE EKDEDGFLY VYASQE FG
Sbjct: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 134 bits (336), Expect = 2e-32
Identities = 66/85 (77%), Positives = 74/85 (87%)
Query: 36 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 95
+RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP
Sbjct: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
Query: 96 ADIYEQEKDEDGFLYMVYASQETFG 120
+++YE EKDEDGFLY VYASQE FG
Sbjct: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 134 bits (336), Expect = 2e-32
Identities = 66/85 (77%), Positives = 74/85 (87%)
Query: 36 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 95
+RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP
Sbjct: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
Query: 96 ADIYEQEKDEDGFLYMVYASQETFG 120
+++YE EKDEDGFLY VYASQE FG
Sbjct: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 99.0 bits (245), Expect = 8e-22
Identities = 48/115 (41%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
FK+ S RC E +IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
IR+R+QL +A FL V++ ++ S + +YE+EKDEDGFLY+ Y+ + TFGF
Sbjct: 64 IRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 80.9 bits (198), Expect = 2e-16
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
+K+ F R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
IR+R+ L P A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 72.8 bits (177), Expect = 6e-14
Identities = 35/114 (30%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
+K+ F R E ++IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
IR+R+ L A F VN + + S + +Y++ +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
Length = 187
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 30 KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMV 89
KI +++ K P++ K+ V + L+ I++ L+L ++ F+ VNQ
Sbjct: 101 KIDILL---KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAP 157
Query: 90 SVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
S + +YE DG L + Y + +G
Sbjct: 158 SPDQEVGTLYEC-FGSDGKLVLHYCKSQAWG 187
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 29.3 bits (64), Expect = 0.74
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 72 QLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQET 118
Q+N T V Q+ M S S P+ D +EQ +DG +Y + +T
Sbjct: 209 QMNVTAPTSPPVQQNMMNSASGPLPDGWEQAMTQDGEIYYINHKNKT 255
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 27.7 bits (60), Expect = 2.2
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 4 DRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKG--------------EKQLPVLDK 49
DR ++R + R +EVQQ D S + E YK + L D+
Sbjct: 21 DRSALKKREWERRNQEVQQEDDLFSSGFDLFGEPYKVAEYTNKGDALANRVQNTLGNYDE 80
Query: 50 TKFLVPDHVNMSELVKIIRRRLQLNP 75
K L+ +H N + LV I + + NP
Sbjct: 81 MKNLLTNHSNQNHLVGIPKNSVPQNP 106
>gi|31542319 epsilon subunit of coatomer protein complex isoform a
[Homo sapiens]
Length = 308
Score = 27.3 bits (59), Expect = 2.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 83 VNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
+N+ V +S+P E++ + D FLY Y +Q FG
Sbjct: 35 INEAQRVKLSSP-----ERDVERDVFLYRAYLAQRKFG 67
>gi|40805827 epsilon subunit of coatomer protein complex isoform c
[Homo sapiens]
Length = 256
Score = 27.3 bits (59), Expect = 2.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 83 VNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
+N+ V +S+P E++ + D FLY Y +Q FG
Sbjct: 35 INEAQRVKLSSP-----ERDVERDVFLYRAYLAQRKFG 67
>gi|40805825 epsilon subunit of coatomer protein complex isoform b
[Homo sapiens]
Length = 257
Score = 27.3 bits (59), Expect = 2.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 83 VNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
+N+ V +S+P E++ + D FLY Y +Q FG
Sbjct: 35 INEAQRVKLSSP-----ERDVERDVFLYRAYLAQRKFG 67
>gi|153791466 AMIGO protein [Homo sapiens]
Length = 493
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 89 VSVSTPIADIYEQEKDEDGFLYMVYASQETF 119
VSVS + +++Q + EDG +Y YA ETF
Sbjct: 318 VSVSKDGSLLFQQVQVEDGGVYTCYAMGETF 348
>gi|7019323 dolichyl-phosphate beta-glucosyltransferase isoform 1
[Homo sapiens]
Length = 324
Score = 26.2 bits (56), Expect = 6.3
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 23 IRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLL 82
I D ++ V++ Y EK+LPV+ M E + + +R + +P + ++
Sbjct: 59 IWDSPTKQLSVVVPSYNEEKRLPVM------------MDEALSYLEKRQKRDPAFTYEVI 106
Query: 83 VNQHSMVSVSTPIADIYEQEKDED 106
V ++ +A Y Q+ D
Sbjct: 107 VVDDGSKDQTSKVAFKYCQKYGSD 130
>gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo
sapiens]
Length = 778
Score = 26.2 bits (56), Expect = 6.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 76 TQAFFLLVNQHSMVSVSTPIADIYEQEKDED----------GFLYMVYASQE 117
T +FL+++ T + D+ E E++ED GF+ +YA QE
Sbjct: 614 TWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQE 665
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 26.2 bits (56), Expect = 6.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 76 TQAFFLLVNQHSMVSVSTPIADIYEQEKDED----------GFLYMVYASQE 117
T +FL+++ T + D+ E E++ED GF+ +YA QE
Sbjct: 835 TWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQE 886
>gi|115511057 hypothetical protein LOC256643 [Homo sapiens]
Length = 682
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 2 PSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLP 45
P DR F++ + R K+V++ + P++ P ++K E LP
Sbjct: 206 PEDRDFRKYGHTSKRPKDVERYESREPARNP----KWKPEHSLP 245
>gi|9506931 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
Length = 547
Score = 25.8 bits (55), Expect = 8.2
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 5 RPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLP 45
RP K+R+ + C++ ++ + Q+P + ++KG+K P
Sbjct: 506 RPHKKRKKLSSSCRKAKRAKSQNPLR----SFKHKGKKFRP 542
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 25.8 bits (55), Expect = 8.2
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 18 KEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLN-PT 76
+EV Q+R + K+ V IE + +KQL + +K K ++ ++ + V+ + R LQ++
Sbjct: 2112 EEVHQLR-RGIEKLRVRIEADE-KKQLHIAEKLKERERENDSLKDKVENLERELQMSEEN 2169
Query: 77 QAFFLLVNQHSMVSVSTPIADIYEQEK 103
Q +L ++S V T I E +
Sbjct: 2170 QELVILDAENSKAEVETLKTQIEEMAR 2196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,294,224
Number of Sequences: 37866
Number of extensions: 160578
Number of successful extensions: 380
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 27
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.