Guide to the Human Genome
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Name: DDX56 Sequence: fasta or formatted (547aa) NCBI GI: 9506931
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 56

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         43           2
 C cysteine            1.5          8           1
 D aspartate           4.6         25           1
 E glutamate           7.1         39           3
 F phenylalanine       4.0         22           1
 G glycine             5.5         30           1
 H histidine           3.1         17           2
 I isoleucine          3.7         20           2
 K lysine              6.6         36           2
 L leucine            14.8         81           3
 M methionine          1.5          8           1
 N asparagine          2.2         12           2
 P proline             6.4         35           2
 Q glutamine           4.9         27           2
 R arginine            7.9         43           2
 S serine              5.9         32           3
 T threonine           3.8         21           1
 V valine              6.6         36           3
 W tryptophan          0.2          1           1
 Y tyrosine            2.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 
DDX47                 0.171   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX27                 0.166   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX6                  0.136   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX49                 0.131   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
EIF4A1                0.129   eukaryotic translation initiation factor 4A isoform 1...
DDX54                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX18                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
EIF4A3                0.127   eukaryotic translation initiation factor 4A, isoform ...
EIF4A2                0.127   eukaryotic translation initiation factor 4A2 
DDX46                 0.126   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX10                 0.125   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX42                 0.125   DEAD box polypeptide 42 protein 
DDX42                 0.125   DEAD box polypeptide 42 protein 
DDX17                 0.119   DEAD box polypeptide 17 isoform 3 
DDX17                 0.119   DEAD box polypeptide 17 isoform 1 
DDX47                 0.118   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX25                 0.118   DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 
DDX55                 0.117   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
DDX5                  0.116   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX59                 0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX52                 0.114   ATP-dependent RNA helicase ROK1 isoform b 
DDX52                 0.114   ATP-dependent RNA helicase ROK1 isoform a 
DDX19B                0.113   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H...
DDX19A                0.112   DDX19-like protein 
DDX41                 0.110   DEAD-box protein abstrakt 
DDX43                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX31                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ...
DDX4                  0.106   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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