Guide to the Human Genome
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Name: PROK1 Sequence: fasta or formatted (105aa) NCBI GI: 14165282
Description:

prokineticin 1

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          5           1
 C cysteine           10.5         11           2
 D aspartate           3.8          4           1
 E glutamate           3.8          4           2
 F phenylalanine       3.8          4           2
 G glycine             8.6          9           1
 H histidine           3.8          4           2
 I isoleucine          3.8          4           1
 K lysine              3.8          4           1
 L leucine            10.5         11           3
 M methionine          3.8          4           1
 N asparagine          2.9          3           1
 P proline             5.7          6           1
 Q glutamine           1.0          1           1
 R arginine           10.5         11           1
 S serine              5.7          6           1
 T threonine           5.7          6           1
 V valine              5.7          6           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prokineticin 1 
PROK2                 0.466   prokineticin 2 isoform b precursor 
PROK2                 0.403   prokineticin 2 isoform a precursor 
DKK4                  0.097   dickkopf homolog 4 precursor 
DKK2                  0.073   dickkopf homolog 2 precursor 
DKK3                  0.073   dickkopf homolog 3 precursor 
DKK3                  0.073   dickkopf homolog 3 precursor 
DKK3                  0.073   dickkopf homolog 3 precursor 
DKK1                  0.068   dickkopf homolog 1 precursor 
CRIPAK                0.034   cysteine-rich PAK1 inhibitor 
LRP1B                 0.024   low density lipoprotein-related protein 1B precursor...
THBS2                 0.024   thrombospondin 2 precursor 
ADAM2                 0.024   ADAM metallopeptidase domain 2 proprotein 
MLL4                  0.019   myeloid/lymphoid or mixed-lineage leukemia 4 
NOTCH1                0.019   notch1 preproprotein 
LAMA1                 0.019   laminin, alpha 1 precursor 
CLPS                  0.015   colipase preproprotein 
LAMB4                 0.015   laminin, beta 4 
LAMA3                 0.015   laminin alpha 3 subunit isoform 1 
LAMA3                 0.015   laminin alpha 3 subunit isoform 3 
MAN2A1                0.015   mannosidase, alpha, class 2A, member 1 
LOC100294257          0.015   PREDICTED: hypothetical protein XP_002344070 
MAN2A2                0.015   mannosidase, alpha, class 2A, member 2 
GRN                   0.010   granulin precursor 
LOC100292731          0.010   PREDICTED: hypothetical protein 
LOC100290536          0.010   PREDICTED: hypothetical protein XP_002347001 
LOC100286951          0.010   PREDICTED: hypothetical protein XP_002342854 
THBS1                 0.010   thrombospondin 1 precursor 
MUC2                  0.010   mucin 2 precursor 
LOC100294420          0.010   PREDICTED: similar to mucin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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