Guide to the Human Genome
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Name: LOC100294257 Sequence: fasta or formatted (222aa) NCBI GI: 239740845
Description:

PREDICTED: hypothetical protein XP_002344070

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         15           2
 C cysteine            4.1          9           1
 D aspartate           2.7          6           1
 E glutamate           5.9         13           2
 F phenylalanine       4.1          9           1
 G glycine            15.8         35           3
 H histidine           1.8          4           2
 I isoleucine          0.9          2           1
 K lysine              5.0         11           2
 L leucine             9.5         21           3
 M methionine          0.9          2           1
 N asparagine          1.8          4           1
 P proline             7.7         17           1
 Q glutamine           2.3          5           1
 R arginine            8.6         19           2
 S serine              6.3         14           1
 T threonine           6.8         15           2
 V valine              4.1          9           2
 W tryptophan          4.1          9           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344070 
LOC100294209          0.619   PREDICTED: hypothetical protein 
LOC100294096          0.617   PREDICTED: hypothetical protein 
TMEM105               0.022   transmembrane protein 105 
LOC100288473          0.017   PREDICTED: hypothetical protein XP_002343336 
KBTBD11               0.017   kelch repeat and BTB (POZ) domain containing 11 [Homo...
ZNF469                0.017   zinc finger protein 469 
KLF1                  0.015   Kruppel-like factor 1 (erythroid) 
NTN3                  0.015   netrin 3 
LRCH2                 0.013   leucine-rich repeats and calponin homology (CH) dom...
SSPO                  0.011   SCO-spondin 
CLGN                  0.011   calmegin 
CLGN                  0.011   calmegin 
LOC100292623          0.009   PREDICTED: hypothetical protein 
LOC100290254          0.009   PREDICTED: hypothetical protein XP_002347960 
BIN1                  0.009   bridging integrator 1 isoform 7 
BIN1                  0.009   bridging integrator 1 isoform 3 
TK2                   0.009   thymidine kinase 2, mitochondrial 
VWCE                  0.009   von Willebrand factor C and EGF domains 
AMAC1                 0.009   acyl-malonyl condensing enzyme 1 
LOC100293408          0.009   PREDICTED: hypothetical protein 
LOC100289362          0.009   PREDICTED: hypothetical protein 
LOC100289782          0.009   PREDICTED: hypothetical protein XP_002347588 
LOC100289362          0.009   PREDICTED: hypothetical protein XP_002343719 
SPSB2                 0.007   splA/ryanodine receptor domain and SOCS box contain...
LOC100130897          0.007   PREDICTED: hypothetical protein 
LOC100130897          0.007   PREDICTED: hypothetical protein 
APOB48R               0.007   apolipoprotein B48 receptor 
AMAC1L3               0.007   acyl-malonyl condensing enzyme 1-like 3 
LOC100132369          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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