Guide to the Human Genome
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Name: DKK1 Sequence: fasta or formatted (266aa) NCBI GI: 7110719
Description:

dickkopf homolog 1 precursor

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         23           3
 C cysteine            7.5         20           2
 D aspartate           3.4          9           1
 E glutamate           4.5         12           2
 F phenylalanine       1.9          5           1
 G glycine            10.9         29           2
 H histidine           4.9         13           2
 I isoleucine          3.8         10           1
 K lysine              4.9         13           1
 L leucine             6.8         18           2
 M methionine          2.3          6           2
 N asparagine          4.1         11           1
 P proline             4.5         12           3
 Q glutamine           3.8         10           1
 R arginine            6.8         18           2
 S serine              8.6         23           2
 T threonine           4.9         13           2
 V valine              4.1         11           1
 W tryptophan          0.4          1           1
 Y tyrosine            3.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dickkopf homolog 1 precursor 
DKK2                  0.322   dickkopf homolog 2 precursor 
DKK4                  0.222   dickkopf homolog 4 precursor 
DKK3                  0.057   dickkopf homolog 3 precursor 
DKK3                  0.057   dickkopf homolog 3 precursor 
DKK3                  0.057   dickkopf homolog 3 precursor 
PROK2                 0.031   prokineticin 2 isoform b precursor 
PROK1                 0.026   prokineticin 1 
PROK2                 0.024   prokineticin 2 isoform a precursor 
C1orf187              0.022   chromosome 1 open reading frame 187 
LTBP4                 0.015   latent transforming growth factor beta binding prot...
LTBP4                 0.015   latent transforming growth factor beta binding prot...
LTBP4                 0.015   latent transforming growth factor beta binding prot...
MEGF6                 0.015   EGF-like-domain, multiple 3 
PEAR1                 0.013   platelet endothelial aggregation receptor 1 
MEGF11                0.013   multiple EGF-like-domains 11 
FLG2                  0.013   filaggrin family member 2 
ZNF837                0.013   zinc finger protein 837 isoform 1 
ZNF837                0.013   zinc finger protein 837 isoform 2 
GAS1                  0.013   growth arrest-specific 1 
FAM40A                0.013   hypothetical protein LOC85369 
ANXA11                0.013   annexin A11 
ANXA11                0.013   annexin A11 
ANXA11                0.013   annexin A11 
TRAF5                 0.013   TNF receptor-associated factor 5 
TRAF5                 0.013   TNF receptor-associated factor 5 
TRAF5                 0.013   TNF receptor-associated factor 5 
MEGF10                0.011   multiple EGF-like-domains 10 
F12                   0.009   coagulation factor XII precursor 
FBN2                  0.009   fibrillin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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