Guide to the Human Genome
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Name: LOC100290536 Sequence: fasta or formatted (236aa) NCBI GI: 239749342
Description:

PREDICTED: hypothetical protein XP_002347001

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         15           2
 C cysteine            6.4         15           1
 D aspartate           1.3          3           1
 E glutamate           4.2         10           2
 F phenylalanine       5.1         12           1
 G glycine             8.1         19           2
 H histidine           3.8          9           2
 I isoleucine          2.1          5           1
 K lysine              3.4          8           1
 L leucine            11.9         28           1
 M methionine          4.7         11           1
 N asparagine          2.1          5           1
 P proline             7.2         17           2
 Q glutamine           2.5          6           1
 R arginine            4.7         11           1
 S serine             11.9         28           2
 T threonine           6.4         15           1
 V valine              3.8          9           1
 W tryptophan          1.7          4           1
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347001 
LOC100292731          1.000   PREDICTED: hypothetical protein 
LOC100286951          1.000   PREDICTED: hypothetical protein XP_002342854 
ZNF646                0.011   zinc finger protein 646 
SPNS3                 0.011   spinster homolog 3 
FCRL3                 0.008   Fc receptor-like 3 precursor 
SEBOX                 0.008   SEBOX homeobox isoform 1 
SEBOX                 0.008   SEBOX homeobox isoform 2 
ZNF577                0.008   zinc finger protein 577 isoform a 
PARK2                 0.006   parkin isoform 3 
PARK2                 0.006   parkin isoform 2 
PARK2                 0.006   parkin isoform 1 
VWF                   0.006   von Willebrand factor preproprotein 
TNC                   0.006   tenascin C precursor 
ZNF577                0.006   zinc finger protein 577 isoform b 
USP54                 0.006   ubiquitin specific peptidase 54 
TET2                  0.006   tet oncogene family member 2 isoform b 
TET2                  0.006   tet oncogene family member 2 isoform a 
HMCN2                 0.006   PREDICTED: hemicentin 2 
HMCN2                 0.006   PREDICTED: hemicentin 2 
HMCN2                 0.006   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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