Search of human proteins with 9966803

Search of human proteins with 9966803

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
         (424 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]        844   0.0  
gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]       673   0.0  
gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]       673   0.0  
gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens]      293   2e-79
gi|193083114 poly(rC) binding protein 2 isoform g [Homo sapiens]      286   3e-77
gi|148833484 poly(rC) binding protein 2 isoform c [Homo sapiens]      283   3e-76
gi|193083112 poly(rC) binding protein 2 isoform f [Homo sapiens]      277   1e-74
gi|193083110 poly(rC) binding protein 2 isoform e [Homo sapiens]      266   2e-71
gi|14141166 poly(rC) binding protein 2 isoform b [Homo sapiens]       266   2e-71
gi|193083108 poly(rC) binding protein 2 isoform d [Homo sapiens]      261   1e-69
gi|14141168 poly(rC) binding protein 2 isoform a [Homo sapiens]       261   1e-69
gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens]      251   1e-66
gi|222352151 poly(rC) binding protein 1 [Homo sapiens]                238   8e-63
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ...    59   1e-08
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ...    59   1e-08
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ...    59   1e-08
gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo ...    58   1e-08
gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo ...    58   1e-08
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]          57   2e-08
gi|154355000 KH-type splicing regulatory protein [Homo sapiens]        57   3e-08
gi|17402900 far upstream element-binding protein [Homo sapiens]        57   3e-08
gi|100816392 far upstream element (FUSE) binding protein 3 [Homo...    56   5e-08
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap...    52   8e-07
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap...    52   8e-07
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ...    48   1e-05
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]                     48   1e-05
gi|112421108 capicua homolog [Homo sapiens]                            45   2e-04
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s...    44   4e-04
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa...    44   4e-04
gi|145312259 tudor and KH domain containing isoform a [Homo sapi...    44   4e-04

>gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
          Length = 424

 Score =  844 bits (2181), Expect = 0.0
 Identities = 424/424 (100%), Positives = 424/424 (100%)

Query: 1   MPRCPALILYLQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANG 60
           MPRCPALILYLQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANG
Sbjct: 1   MPRCPALILYLQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANG 60

Query: 61  GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLW 120
           GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLW
Sbjct: 61  GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLW 120

Query: 121 RPPHLESSEPGQPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAI 180
           RPPHLESSEPGQPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAI
Sbjct: 121 RPPHLESSEPGQPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAI 180

Query: 181 ILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQL 240
           ILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQL
Sbjct: 181 ILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQL 240

Query: 241 SSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGN 300
           SSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGN
Sbjct: 241 SSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGN 300

Query: 301 QAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALP 360
           QAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALP
Sbjct: 301 QAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALP 360

Query: 361 TAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQK 420
           TAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQK
Sbjct: 361 TAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQK 420

Query: 421 FSPY 424
           FSPY
Sbjct: 421 FSPY 424


>gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]
          Length = 403

 Score =  673 bits (1737), Expect = 0.0
 Identities = 356/413 (86%), Positives = 358/413 (86%), Gaps = 55/413 (13%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR
Sbjct: 46  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 105

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LVIPASQCGSLIGKAGTKIK   E+R                                  
Sbjct: 106 LVIPASQCGSLIGKAGTKIK---EIR---------------------------------- 128

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             +TTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI
Sbjct: 129 ------------------ETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 170

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS 251
           LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS
Sbjct: 171 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS 230

Query: 252 VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVT 311
           VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVT
Sbjct: 231 VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVT 290

Query: 312 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY 371
           ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY 350

Query: 372 AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY 424
           AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
Sbjct: 351 AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY 403



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 262 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA-GERHVTITGSPVSIA 320
           T +   L+    +G +IG++G  +  IR+ S A I I   +EG+  ER  TITGS  ++ 
Sbjct: 17  TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---SEGSCPERITTITGSTAAVF 73

Query: 321 LAQYLITACLE---TAKSTSGGTPSSAPADL 348
            A  +I   L+    A   +GG  S  P  L
Sbjct: 74  HAVSMIAFKLDEDLCAAPANGGNVSRPPVTL 104


>gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]
          Length = 403

 Score =  673 bits (1737), Expect = 0.0
 Identities = 356/413 (86%), Positives = 358/413 (86%), Gaps = 55/413 (13%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR
Sbjct: 46  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 105

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LVIPASQCGSLIGKAGTKIK   E+R                                  
Sbjct: 106 LVIPASQCGSLIGKAGTKIK---EIR---------------------------------- 128

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             +TTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI
Sbjct: 129 ------------------ETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 170

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS 251
           LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS
Sbjct: 171 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS 230

Query: 252 VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVT 311
           VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVT
Sbjct: 231 VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVT 290

Query: 312 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY 371
           ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPY 350

Query: 372 AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY 424
           AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
Sbjct: 351 AISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY 403



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 262 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA-GERHVTITGSPVSIA 320
           T +   L+    +G +IG++G  +  IR+ S A I I   +EG+  ER  TITGS  ++ 
Sbjct: 17  TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---SEGSCPERITTITGSTAAVF 73

Query: 321 LAQYLITACLE---TAKSTSGGTPSSAPADL 348
            A  +I   L+    A   +GG  S  P  L
Sbjct: 74  HAVSMIAFKLDEDLCAAPANGGNVSRPPVTL 104


>gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens]
          Length = 371

 Score =  293 bits (750), Expect = 2e-79
 Identities = 169/353 (47%), Positives = 209/353 (59%), Gaps = 80/353 (22%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI TITG T A+F A +MIA+K +ED+  + +N    S+PPVTLR
Sbjct: 74  ESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLR 133

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G+KIK   E+R                                  
Sbjct: 134 LVVPASQCGSLIGKGGSKIK---EIR---------------------------------- 156

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERAVT+SG PDAII CV+QIC V+
Sbjct: 157 ------------------ESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVM 198

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPF---- 247
           LESPPKGATIPY P  +   V+ +  Q +++QGQY    P ++TKL QL+    PF    
Sbjct: 199 LESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLG 258

Query: 248 ATPSVVP--------------------GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISE 287
            T    P                    GLD     S+ E  +PNDLIGC+IGRQG+KI+E
Sbjct: 259 QTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINE 318

Query: 288 IRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGT 340
           IRQMSGA IKI N  EG+ ER +TITG+P +I+LAQYLI A L T++ T  GT
Sbjct: 319 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL-TSEVTGMGT 370



 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
           +VP    G +IG+ GSKI EIR+ +GA +++ G+    + ER VTI+G+P   A+ Q + 
Sbjct: 135 VVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP--DAIIQCVK 192

Query: 327 TACLETAKSTSGGTP---SSAPADLPAPFS 353
             C+   +S   G        PA  P  F+
Sbjct: 193 QICVVMLESPPKGATIPYRPKPASTPVIFA 222



 Score = 37.4 bits (85), Expect = 0.026
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER VTITG   +I  A  +I    E 
Sbjct: 57  VGSIIGKKGETVKKMREESGARINI---SEGNCPERIVTITGPTDAIFKAFAMIAYKFEE 113

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
               S        ++ PA   PP+T     P    G+
Sbjct: 114 DIINS-------MSNSPATSKPPVTLRLVVPASQCGS 143


>gi|193083114 poly(rC) binding protein 2 isoform g [Homo sapiens]
          Length = 318

 Score =  286 bits (731), Expect = 3e-77
 Identities = 164/336 (48%), Positives = 203/336 (60%), Gaps = 63/336 (18%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPF---- 247
           LESPPKG TIPY P  S   V+ +  Q +++QGQY A+   ++TKL QL+     F    
Sbjct: 167 LESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQY-AIPQPDLTKLHQLAMQQSHFPMTH 225

Query: 248 ATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE 307
                  GLD   QT+S E  +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N  EG+ +
Sbjct: 226 GNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 285

Query: 308 RHVTITGSPVSIALAQYLITACLETAKSTSGGTPSS 343
           R VTITGS  SI+LAQYLI   L    S +GG  SS
Sbjct: 286 RQVTITGSAASISLAQYLINVRL---SSETGGMGSS 318



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 13/107 (12%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P SI       
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI------- 155

Query: 327 TACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAI 373
              +E  K        S P  +  P+ P  ++ P    G  G  Y I
Sbjct: 156 ---IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAG--GQAYTI 197



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|148833484 poly(rC) binding protein 2 isoform c [Homo sapiens]
          Length = 331

 Score =  283 bits (723), Expect = 3e-76
 Identities = 167/349 (47%), Positives = 209/349 (59%), Gaps = 76/349 (21%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLS---SH----- 243
           LESPPKG TIPY P  S   V+ +  Q +++QGQY A+   ++TKL QL+   SH     
Sbjct: 167 LESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQY-AIPQPDLTKLHQLAMQQSHFPMTH 225

Query: 244 ------AVPFATPSVV---PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGA 294
                  +  ++P V     GLD   QT+S E  +PNDLIGC+IGRQG+KI+EIRQMSGA
Sbjct: 226 GNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGA 285

Query: 295 HIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSS 343
            IKI N  EG+ +R VTITGS  SI+LAQYLI   L    S +GG  SS
Sbjct: 286 QIKIANPVEGSTDRQVTITGSAASISLAQYLINVRL---SSETGGMGSS 331



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 13/107 (12%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P SI       
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI------- 155

Query: 327 TACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAI 373
              +E  K        S P  +  P+ P  ++ P    G  G  Y I
Sbjct: 156 ---IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAG--GQAYTI 197



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|193083112 poly(rC) binding protein 2 isoform f [Homo sapiens]
          Length = 335

 Score =  277 bits (708), Expect = 1e-74
 Identities = 167/353 (47%), Positives = 209/353 (59%), Gaps = 80/353 (22%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LE----SPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLS---SH- 243
           LE    SPPKG TIPY P  S   V+ +  Q +++QGQY A+   ++TKL QL+   SH 
Sbjct: 167 LETLSQSPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQY-AIPQPDLTKLHQLAMQQSHF 225

Query: 244 ----------AVPFATPSVV---PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQ 290
                      +  ++P V     GLD   QT+S E  +PNDLIGC+IGRQG+KI+EIRQ
Sbjct: 226 PMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 285

Query: 291 MSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSS 343
           MSGA IKI N  EG+ +R VTITGS  SI+LAQYLI   L    S +GG  SS
Sbjct: 286 MSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRL---SSETGGMGSS 335



 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVS-IALAQYL 325
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P S I   + +
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI 162

Query: 326 ITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAI 373
               LET          S P  +  P+ P  ++ P    G  G  Y I
Sbjct: 163 CVVMLETLS-------QSPPKGVTIPYRPKPSSSPVIFAG--GQAYTI 201



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|193083110 poly(rC) binding protein 2 isoform e [Homo sapiens]
          Length = 361

 Score =  266 bits (681), Expect = 2e-71
 Identities = 167/379 (44%), Positives = 209/379 (55%), Gaps = 106/379 (27%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQ-------------------------------GF 220
           LESPPKG TIPY P  S   V+ +  Q                                +
Sbjct: 167 LESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAY 226

Query: 221 SVQGQYGAVTPAEVTKLQQLS---SH-----------AVPFATPSVVP--GLDPGTQTSS 264
           ++QGQY A+   ++TKL QL+   SH            +  ++P V    GLD   QT+S
Sbjct: 227 TIQGQY-AIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTS 285

Query: 265 QEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQY 324
            E  +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N  EG+ +R VTITGS  SI+LAQY
Sbjct: 286 HELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQY 345

Query: 325 LITACLETAKSTSGGTPSS 343
           LI   L    S +GG  SS
Sbjct: 346 LINVRL---SSETGGMGSS 361



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P SI       
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI------- 155

Query: 327 TACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPF 386
              +E  K        S P  +  P+ P  ++ P    G     Y+    +       P 
Sbjct: 156 ---IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS 211

Query: 387 LALPPASPGPPPGLAAYT 404
           + L P   GPP  L AYT
Sbjct: 212 MCLNPDLEGPP--LEAYT 227



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|14141166 poly(rC) binding protein 2 isoform b [Homo sapiens]
          Length = 362

 Score =  266 bits (681), Expect = 2e-71
 Identities = 167/380 (43%), Positives = 209/380 (55%), Gaps = 107/380 (28%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LESPPKGATIPYHPSLSLGTVLLSANQ-------------------------------GF 220
           LESPPKG TIPY P  S   V+ +  Q                                +
Sbjct: 167 LESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAY 226

Query: 221 SVQGQYGAVTPAEVTKLQQLS---SH-----------AVPFATPSVV---PGLDPGTQTS 263
           ++QGQY A+   ++TKL QL+   SH            +  ++P V     GLD   QT+
Sbjct: 227 TIQGQY-AIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTT 285

Query: 264 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
           S E  +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N  EG+ +R VTITGS  SI+LAQ
Sbjct: 286 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 345

Query: 324 YLITACLETAKSTSGGTPSS 343
           YLI   L    S +GG  SS
Sbjct: 346 YLINVRL---SSETGGMGSS 362



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P SI       
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI------- 155

Query: 327 TACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPF 386
              +E  K        S P  +  P+ P  ++ P    G     Y+    +       P 
Sbjct: 156 ---IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS 211

Query: 387 LALPPASPGPPPGLAAYT 404
           + L P   GPP  L AYT
Sbjct: 212 MCLNPDLEGPP--LEAYT 227



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|193083108 poly(rC) binding protein 2 isoform d [Homo sapiens]
          Length = 365

 Score =  261 bits (666), Expect = 1e-69
 Identities = 167/383 (43%), Positives = 209/383 (54%), Gaps = 110/383 (28%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LE----SPPKGATIPYHPSLSLGTVLLSANQ----------------------------- 218
           LE    SPPKG TIPY P  S   V+ +  Q                             
Sbjct: 167 LETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPP 226

Query: 219 --GFSVQGQYGAVTPAEVTKLQQLS---SH-----------AVPFATPSVVP--GLDPGT 260
              +++QGQY A+   ++TKL QL+   SH            +  ++P V    GLD   
Sbjct: 227 LEAYTIQGQY-AIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASA 285

Query: 261 QTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIA 320
           QT+S E  +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N  EG+ +R VTITGS  SI+
Sbjct: 286 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS 345

Query: 321 LAQYLITACLETAKSTSGGTPSS 343
           LAQYLI   L    S +GG  SS
Sbjct: 346 LAQYLINVRL---SSETGGMGSS 365



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVS-IALAQYL 325
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P S I   + +
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI 162

Query: 326 ITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMP 385
               LET          S P  +  P+ P  ++ P    G     Y+    +       P
Sbjct: 163 CVVMLETLS-------QSPPKGVTIPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTP 214

Query: 386 FLALPPASPGPPPGLAAYT 404
            + L P   GPP  L AYT
Sbjct: 215 SMCLNPDLEGPP--LEAYT 231



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|14141168 poly(rC) binding protein 2 isoform a [Homo sapiens]
          Length = 366

 Score =  261 bits (666), Expect = 1e-69
 Identities = 167/384 (43%), Positives = 209/384 (54%), Gaps = 111/384 (28%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+ G T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPASQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++G+P +II CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 166

Query: 192 LE----SPPKGATIPYHPSLSLGTVLLSANQ----------------------------- 218
           LE    SPPKG TIPY P  S   V+ +  Q                             
Sbjct: 167 LETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPP 226

Query: 219 --GFSVQGQYGAVTPAEVTKLQQLS---SH-----------AVPFATPSVV---PGLDPG 259
              +++QGQY A+   ++TKL QL+   SH            +  ++P V     GLD  
Sbjct: 227 LEAYTIQGQY-AIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDAS 285

Query: 260 TQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSI 319
            QT+S E  +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N  EG+ +R VTITGS  SI
Sbjct: 286 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASI 345

Query: 320 ALAQYLITACLETAKSTSGGTPSS 343
           +LAQYLI   L    S +GG  SS
Sbjct: 346 SLAQYLINVRL---SSETGGMGSS 366



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVS-IALAQYL 325
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P S I   + +
Sbjct: 103 VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI 162

Query: 326 ITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMP 385
               LET          S P  +  P+ P  ++ P    G     Y+    +       P
Sbjct: 163 CVVMLETLS-------QSPPKGVTIPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTP 214

Query: 386 FLALPPASPGPPPGLAAYT 404
            + L P   GPP  L AYT
Sbjct: 215 SMCLNPDLEGPP--LEAYT 231



 Score = 35.4 bits (80), Expect = 0.099
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER +T+ G   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKKMREESGARINI---SEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 81

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
             S+S    ++A         PP+T     P    G+
Sbjct: 82  DISSSMTNSTAAS-------RPPVTLRLVVPASQCGS 111


>gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens]
          Length = 345

 Score =  251 bits (640), Expect = 1e-66
 Identities = 156/330 (47%), Positives = 190/330 (57%), Gaps = 60/330 (18%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI TITG T A+F A +MIA+K +ED+  + +N    S+PPVTLR
Sbjct: 74  ESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLR 133

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PASQCGSLIGK G+KIK   E+R                                  
Sbjct: 134 LVVPASQCGSLIGKGGSKIK---EIR---------------------------------- 156

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERAVT+SG PDAII CV+QIC V+
Sbjct: 157 ------------------ESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVM 198

Query: 192 LESPP-KGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATP 250
           LE+   +G     HP L+    L      F   GQ     P E   L   S  A      
Sbjct: 199 LEAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHS-SEEAQNLMGQ 257

Query: 251 SVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 310
           S   GLD     S+ E  +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N  EG+ ER +
Sbjct: 258 S--SGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 315

Query: 311 TITGSPVSIALAQYLITACLETAKSTSGGT 340
           TITG+P +I+LAQYLI A L T++ T  GT
Sbjct: 316 TITGTPANISLAQYLINARL-TSEVTGMGT 344



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
           +VP    G +IG+ GSKI EIR+ +GA +++ G+    + ER VTI+G+P +I      I
Sbjct: 135 VVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 194

Query: 327 TACLETAKSTSGGTPSSAP--------ADLPAPFSPPLTALPTAPPGLLGTPYAISLSNF 378
              +  A +  G      P        A    PF P     P  P   L    +    N 
Sbjct: 195 CVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNL 254

Query: 379 IGLKPMPFLALPPAS 393
           +G +     A PPAS
Sbjct: 255 MG-QSSGLDASPPAS 268



 Score = 37.4 bits (85), Expect = 0.026
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
           +G +IG++G  + ++R+ SGA I I   +EG   ER VTITG   +I  A  +I    E 
Sbjct: 57  VGSIIGKKGETVKKMREESGARINI---SEGNCPERIVTITGPTDAIFKAFAMIAYKFEE 113

Query: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
               S        ++ PA   PP+T     P    G+
Sbjct: 114 DIINS-------MSNSPATSKPPVTLRLVVPASQCGS 143


>gi|222352151 poly(rC) binding protein 1 [Homo sapiens]
          Length = 356

 Score =  238 bits (607), Expect = 8e-63
 Identities = 154/367 (41%), Positives = 200/367 (54%), Gaps = 101/367 (27%)

Query: 12  QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
           +S ARI ISEG+CPERI T+TG T A+F A +MI  KL+ED+ ++  N    SRPPVTLR
Sbjct: 42  ESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLR 101

Query: 72  LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
           LV+PA+QCGSLIGK G KIK   E+R                                  
Sbjct: 102 LVVPATQCGSLIGKGGCKIK---EIR---------------------------------- 124

Query: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
                             ++TGAQVQVAGD+LPNSTERA+T++GVP ++  CV+QIC V+
Sbjct: 125 ------------------ESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVM 166

Query: 192 LES---PPKGA--TIPYHPSLSLGTVLLSANQ----------------------GFSVQG 224
           LE+    P+G   TIPY P  +   V+ +  Q                       +S+QG
Sbjct: 167 LETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQG 226

Query: 225 QYGAVTPAEVTKLQQLSSHAVPFA--------------TPSVV---PGLDPGTQTSSQEF 267
           Q+  ++P ++ KL Q++     FA              +P V      LD  TQT+  E 
Sbjct: 227 QH-TISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HEL 284

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLIT 327
            +PN+LIGC+IGRQG+ I+EIRQMSGA IKI N  EG+  R VTITGS  SI+LAQYLI 
Sbjct: 285 TIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLIN 344

Query: 328 ACLETAK 334
           A L + K
Sbjct: 345 ARLSSEK 351



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIA-LAQYL 325
           +VP    G +IG+ G KI EIR+ +GA +++ G+    + ER +TI G P S+    + +
Sbjct: 103 VVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQI 162

Query: 326 ITACLETAKSTSGGTPSSAPADLPAPFSPPL 356
               LET   +  G   + P   P P S P+
Sbjct: 163 CLVMLETLSQSPQGRVMTIPYQ-PMPASSPV 192



 Score = 36.6 bits (83), Expect = 0.044
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLE- 331
           +G +IG++G  +  IR+ SGA I I   +EG   ER +T+TG   +I  A  +I   LE 
Sbjct: 25  VGSIIGKKGESVKRIREESGARINI---SEGNCPERIITLTGPTNAIFKAFAMIIDKLEE 81

Query: 332 -TAKSTSGGTPSSAP 345
               S +  T +S P
Sbjct: 82  DINSSMTNSTAASRP 96


>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
           [Homo sapiens]
          Length = 464

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSP 316
           D G    + +  +P DL G +IG+ G +I +IR  SGA IKI    EG+ +R +TITG+ 
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441

Query: 317 VSIALAQYLI 326
             I  AQYL+
Sbjct: 442 DQIQNAQYLL 451



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 150 QTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPS 206
           + T   +++  +  P+ST+R V + G PD ++ C++ I  +I ESP KG   PY P+
Sbjct: 172 ENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPN 228



 Score = 37.0 bits (84), Expect = 0.034
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 61  GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
           G++  P +T ++ IP    GS+IGK G +IK+IR   G
Sbjct: 381 GDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418



 Score = 34.3 bits (77), Expect = 0.22
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 20/101 (19%)

Query: 14  SARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRP------- 66
           +A +++ + S PERI +I+     +   +  I   L+E L   P+       P       
Sbjct: 73  NASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGL-QLPSPTATSQLPLESDAVE 131

Query: 67  ------------PVTLRLVIPASQCGSLIGKAGTKIKEIRE 95
                          LRL+I  S  G +IG  G KIKE+RE
Sbjct: 132 CLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ-AEGAGERHVTITGSP 316
           L+   L G +IG +G+KI E+R+ +   IK+  +    + +R V I G P
Sbjct: 150 LIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 199


>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
           [Homo sapiens]
          Length = 463

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSP 316
           D G    + +  +P DL G +IG+ G +I +IR  SGA IKI    EG+ +R +TITG+ 
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441

Query: 317 VSIALAQYLI 326
             I  AQYL+
Sbjct: 442 DQIQNAQYLL 451



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 150 QTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPS 206
           + T   +++  +  P+ST+R V + G PD ++ C++ I  +I ESP KG   PY P+
Sbjct: 172 ENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPN 228



 Score = 37.0 bits (84), Expect = 0.034
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 61  GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
           G++  P +T ++ IP    GS+IGK G +IK+IR   G
Sbjct: 381 GDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418



 Score = 34.3 bits (77), Expect = 0.22
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 20/101 (19%)

Query: 14  SARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRP------- 66
           +A +++ + S PERI +I+     +   +  I   L+E L   P+       P       
Sbjct: 73  NASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGL-QLPSPTATSQLPLESDAVE 131

Query: 67  ------------PVTLRLVIPASQCGSLIGKAGTKIKEIRE 95
                          LRL+I  S  G +IG  G KIKE+RE
Sbjct: 132 CLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ-AEGAGERHVTITGSP 316
           L+   L G +IG +G+KI E+R+ +   IK+  +    + +R V I G P
Sbjct: 150 LIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 199


>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
           [Homo sapiens]
          Length = 464

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSP 316
           D G    + +  +P DL G +IG+ G +I +IR  SGA IKI    EG+ +R +TITG+ 
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441

Query: 317 VSIALAQYLI 326
             I  AQYL+
Sbjct: 442 DQIQNAQYLL 451



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 150 QTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPS 206
           + T   +++  +  P+ST+R V + G PD ++ C++ I  +I ESP KG   PY P+
Sbjct: 172 ENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPN 228



 Score = 37.0 bits (84), Expect = 0.034
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 61  GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
           G++  P +T ++ IP    GS+IGK G +IK+IR   G
Sbjct: 381 GDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418



 Score = 34.3 bits (77), Expect = 0.22
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 20/101 (19%)

Query: 14  SARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRP------- 66
           +A +++ + S PERI +I+     +   +  I   L+E L   P+       P       
Sbjct: 73  NASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGL-QLPSPTATSQLPLESDAVE 131

Query: 67  ------------PVTLRLVIPASQCGSLIGKAGTKIKEIRE 95
                          LRL+I  S  G +IG  G KIKE+RE
Sbjct: 132 CLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ-AEGAGERHVTITGSP 316
           L+   L G +IG +G+KI E+R+ +   IK+  +    + +R V I G P
Sbjct: 150 LIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 199


>gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo
           sapiens]
          Length = 507

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 244 AVPFATPSVVPGLDPGTQTSSQ--EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ 301
           A P A  +++ G +  T  S    E  VP +L+G ++G+ G  + E ++++GA I+I  +
Sbjct: 402 ASPLAASAIL-GTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460

Query: 302 AE---GAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTP 341
            E   G   R VTITG+P +   AQYLIT  +   +      P
Sbjct: 461 GEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANP 503



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 43/236 (18%)

Query: 152 TGAQVQVAG--DLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSL 209
           TGA ++++   D  P +TER   + G  +A+      I   I E P              
Sbjct: 79  TGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQN------------ 126

Query: 210 GTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQE--F 267
               ++  +  S+      V P  + K    SS     ++PS     DP T + + +   
Sbjct: 127 ----VAKTEPVSILQPQTTVNPDRI-KQTLPSSPTTTKSSPS-----DPMTTSRANQVKI 176

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG--ERHVTITGSPVSIALAQYL 325
           +VPN   G +IG+ G+ +  + + SGA +++  + +G    ER VT++G P     A  L
Sbjct: 177 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVEL 236

Query: 326 IT----------ACLETA-KSTSGGTPSSAPADLPAPFSPPLTALPT--APPGLLG 368
           I           +CL  +  + +G   +S P    +P++     LPT  A  GLLG
Sbjct: 237 IIQKIQEDPQSGSCLNISYANVTGPVANSNPTG--SPYANTAEVLPTAAAAAGLLG 290



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGS 315
           L+P+   G +IG+ G  I ++++ +GA IK+    +   G  ER   I G+
Sbjct: 55  LIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 105



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 48  KLDEDLCAAPANGGNVSRPPVT------LRLVIPASQCGSLIGKAGTKIKEIREVRG 98
           ++ + L ++P    +    P+T      +++++P S  G +IGK G  +K + E  G
Sbjct: 146 RIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSG 202



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 150 QTTGAQVQVA--GDLLPNSTERAVTVSGVPDA 179
           + TGA++Q++  G+ +P +  R VT++G P A
Sbjct: 449 ELTGARIQISKKGEFVPGTRNRKVTITGTPAA 480


>gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo
           sapiens]
          Length = 483

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 244 AVPFATPSVVPGLDPGTQTSSQ--EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ 301
           A P A  +++ G +  T  S    E  VP +L+G ++G+ G  + E ++++GA I+I  +
Sbjct: 378 ASPLAASAIL-GTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 436

Query: 302 AE---GAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTP 341
            E   G   R VTITG+P +   AQYLIT  +   +      P
Sbjct: 437 GEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANP 479



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 17/118 (14%)

Query: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG--ERHVTITGSPVSIALAQ 323
           + +VPN   G +IG+ G+ +  + + SGA +++  + +G    ER VT++G P     A 
Sbjct: 151 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 210

Query: 324 YLIT----------ACLETA-KSTSGGTPSSAPADLPAPFSPPLTALPT--APPGLLG 368
            LI           +CL  +  + +G   +S P    +P++     LPT  A  GLLG
Sbjct: 211 ELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTG--SPYANTAEVLPTAAAAAGLLG 266



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 26  ERITTITGSTAAVFHAVSMIAFKLDE-DLCAAPANGGNVSRPPVTL--------RLVIPA 76
           ER+  I G+  A+      IA K+ E     A     ++ +P  T+        ++++P 
Sbjct: 97  ERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPN 156

Query: 77  SQCGSLIGKAGTKIKEIREVRG 98
           S  G +IGK G  +K + E  G
Sbjct: 157 STAGLIIGKGGATVKAVMEQSG 178



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGS 315
           L+P+   G +IG+ G  I ++++ +GA IK+    +   G  ER   I G+
Sbjct: 55  LIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 105



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 150 QTTGAQVQVA--GDLLPNSTERAVTVSGVPDA 179
           + TGA++Q++  G+ +P +  R VT++G P A
Sbjct: 425 ELTGARIQISKKGEFVPGTRNRKVTITGTPAA 456


>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
          Length = 492

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 85/353 (24%), Positives = 130/353 (36%), Gaps = 74/353 (20%)

Query: 12  QSSARITISEG----SCPERITTITGSTAAVFHAVSMIAFKLDED-------------LC 54
           QS A + +S+     +  ER+ T++G    V  AVS I  K+ ED             + 
Sbjct: 159 QSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVA 218

Query: 55  AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVR 114
              AN      P  +   V+PA+   S    +G            +  P G+ G GA   
Sbjct: 219 GPVANSNPTGSPYASPADVLPAAAAASAAAASG------------LLGPAGLAGVGAF-- 264

Query: 115 GVLGLWRPPHLESSEPGQPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAV--- 171
                  P  L +      FSG         +  L + G      G  L ++    V   
Sbjct: 265 -------PAALPA------FSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAA 311

Query: 172 TVSGVPDAIILCVRQICAVILES---PPKGATIPYHPSL-SLGTVLLSANQGFSVQGQYG 227
             +G   A       + +   E+   P  GA  P  P   +LG+  L+A    +  G  G
Sbjct: 312 VAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAA----AANGYLG 367

Query: 228 AVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQ----------EFLVPNDLIGCV 277
           A                 P    +   G   G  T+ +          E  VP +L+G +
Sbjct: 368 AGAGGGA------GGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAI 421

Query: 278 IGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSIALAQYLIT 327
           +G+ G  + E ++++GA I+I  + E   G   R VTITGSP +   AQYLI+
Sbjct: 422 LGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLIS 474



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 31/174 (17%)

Query: 222 VQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGT-----QTSSQEFLVPNDLIGC 276
           VQG   A+        +++         P VV  L P T     +    + +VPN   G 
Sbjct: 85  VQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGL 144

Query: 277 VIGRQGSKISEIRQMSGAHIKIGNQAEGAG--ERHVTITGSPVSIALAQYLI-------- 326
           +IG+ G+ +  + + SGA +++  + EG    ER VT++G P  +  A   I        
Sbjct: 145 IIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDP 204

Query: 327 --TACLE---------TAKSTSGGTPSSAPAD-LPAPFSPPLTALPTAPPGLLG 368
             ++CL           A S   G+P ++PAD LPA       A   A  GLLG
Sbjct: 205 QSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA----AAAASAAAASGLLG 254



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 92/423 (21%), Positives = 146/423 (34%), Gaps = 96/423 (22%)

Query: 51  EDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG--------EIYH 102
           E +C   +N G        L+++IP+   GS+IGK G  I ++++  G        + ++
Sbjct: 18  EVVCTKRSNTGEEGE--YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY 75

Query: 103 PQGIRGKGAVVRGVLGLWRPPHLESSEPGQPFSGLWEQPEVAPVLCLQTT--GAQVQVAG 160
           P G   +  +V+G        H   +E  +       +PEV  +L  QTT    + + A 
Sbjct: 76  P-GTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK 134

Query: 161 DLLPNST-----------------------------------ERAVTVSGVPDAIILCVR 185
            ++PNST                                   ER VTVSG P+ +   V 
Sbjct: 135 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVS 194

Query: 186 QICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAV 245
            I   + E P   + +                   S     G V  +  T          
Sbjct: 195 AIVQKVQEDPQSSSCL-----------------NISYANVAGPVANSNPT--------GS 229

Query: 246 PFATPS-VVPGLDPGTQTSSQEFLVPNDLIG------CVIGRQGSKISEIRQMSGAHIKI 298
           P+A+P+ V+P     +  ++   L P  L G       +    G+ +  I          
Sbjct: 230 PYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASY 289

Query: 299 G--NQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPL 356
           G    + G G      +G   ++A       A      ++  G   + PA   AP  PP 
Sbjct: 290 GYNTNSLGLGLNSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPP- 348

Query: 357 TALPTAPPGLLGT-PYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKK 415
                 PPG LG+   A + + ++G       A   A  G  P L A  A   AA G   
Sbjct: 349 ------PPGALGSFALAAAANGYLGAG-----AGGGAGGGGGP-LVAAAAAAGAAGGFLT 396

Query: 416 AER 418
           AE+
Sbjct: 397 AEK 399


>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
          Length = 711

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 211 TVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVP 270
           T + ++   F   GQ   +   +  + ++L+S     ++  + P   P   + ++E+ VP
Sbjct: 94  TTVNNSTPDFGFGGQKRQLEDGDQPESKKLASQGDSISS-QLGPIHPPPRTSMTEEYRVP 152

Query: 271 NDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACL 330
           + ++G +IGR G +I++I+Q SG  ++I   + G  ER V++TG+P S+  A+ ++   +
Sbjct: 153 DGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIV 212

Query: 331 ETAKSTSGGTP 341
              +   GG P
Sbjct: 213 SRGR---GGPP 220



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 259 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGS 315
           G       F +P    G VIGR G  +  I Q +GA ++I  Q    G+   +   I GS
Sbjct: 421 GPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGS 480

Query: 316 PVSIALAQYLITACLETAKSTSGGTPSS-APADLPAPFSP-PLT-ALPTAPPGLLGTP 370
           P  I  A+ LI   +E      G  P    PA    PF+P P     P APP   G P
Sbjct: 481 PQQIDHAKQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPP 538



 Score = 38.5 bits (88), Expect = 0.012
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 16  RITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAP------ANGGNVSRPPVT 69
           +I+   G  PER  ++TG+  +V  A  M+   +       P      ANGG        
Sbjct: 179 QISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNG---TV 235

Query: 70  LRLVIPASQCGSLIGKAGTKIKEIREVRG 98
             ++IPA + G +IGK G  IK+++E  G
Sbjct: 236 QEIMIPAGKAGLVIGKGGETIKQLQERAG 264



 Score = 36.6 bits (83), Expect = 0.044
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 269 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG-ERHVTITGSPVSIALAQYLIT 327
           VP   +G VIGR G  I +I+  +G  I+   Q +G G E+   I G P     A  +I 
Sbjct: 329 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQF-KQDDGTGPEKIAHIMGPPDRCEHAARIIN 387

Query: 328 ACLETAKSTSGGTP 341
             L++ +S   G P
Sbjct: 388 DLLQSLRSGPPGPP 401



 Score = 34.3 bits (77), Expect = 0.22
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 20/116 (17%)

Query: 3   RCPALILYLQSSARITIS----EGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPA 58
           R   +I  +Q+ A + I     +G+ PE+I  I G      HA  +I   L       P 
Sbjct: 340 RSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPG 399

Query: 59  NGGNVSRPPV----------------TLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
             G    PP                  +   IP  +CG +IG+ G  +K I +  G
Sbjct: 400 PPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTG 455



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 259 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAH---IKIGNQAEGAGERHVTITGS 315
           G   + QE ++P    G VIG+ G  I ++++ +G     I+ G+Q     ++ + I G 
Sbjct: 230 GQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGD 288

Query: 316 PVSIALA 322
           P  +  A
Sbjct: 289 PYKVQQA 295



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 341 PSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPP 398
           P   P   PAP +PP    P  PP    + Y  +   +        +   P  PG PP
Sbjct: 588 PGPVPGPAPAPAAPPAQGEPPQPPPTGQSDYTKAWEEY-----YKKIGQQPQQPGAPP 640


>gi|17402900 far upstream element-binding protein [Homo sapiens]
          Length = 644

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 210 GTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLV 269
           GT L S + G+   GQ   +   +    ++++     F T              ++E+ V
Sbjct: 50  GTSLNSNDYGYG--GQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMTEEYKV 107

Query: 270 PNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITAC 329
           P+ ++G +IGR G +IS I+Q SG  I+I   + G  ER   +TG+P S+  A+ L+   
Sbjct: 108 PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQI 167

Query: 330 LETAKSTSGGTPSSAPAD 347
           +E  +   G      P +
Sbjct: 168 VEKGRPAPGFHHGDGPGN 185



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 20/135 (14%)

Query: 267 FLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV---TITGSPVSIALAQ 323
           F+VP    G +IG+ G  I  I Q SGA I++        + ++   TI G+P  I  A+
Sbjct: 381 FIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYAR 440

Query: 324 YLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKP 383
            LI   +    +  G      P  +P P  PP       PPG  GTP            P
Sbjct: 441 QLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPP------GPPG-PGTPMG-------PYNP 486

Query: 384 MPFLALPPASPGPPP 398
            P+    P  PGP P
Sbjct: 487 APY---NPGPPGPAP 498



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 230 TPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSS--QEFLVPNDLIGCVIGRQGSKISE 287
           TP  V   ++L    V    P+  PG   G    +  QE ++P    G VIG+ G  I +
Sbjct: 153 TPESVQSAKRLLDQIVEKGRPA--PGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQ 210

Query: 288 IRQMSGAH---IKIGNQAEGAGERHVTITGSPVSIALAQYLI 326
           +++ +G     I+ G Q  GA ++ + ITG P  +  A+ ++
Sbjct: 211 LQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMV 251



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 23/73 (31%), Positives = 34/73 (46%)

Query: 269 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 328
           +P   +G VIGR G  I +I+  +G  I+         ER   ITG P     A  +IT 
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITD 341

Query: 329 CLETAKSTSGGTP 341
            L + ++ + G P
Sbjct: 342 LLRSVQAGNPGGP 354



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 7   LILYLQSSARITIS----EGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGN 62
           +I  +Q+ A + I     +G+ PERI  ITG      HA  +I   L       P   G 
Sbjct: 297 MIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGP 356

Query: 63  VSR------------PPVTLR---LVIPASQCGSLIGKAGTKIKEIREVRG 98
             R            PP  L+    ++P  + G +IGK G  IK I +  G
Sbjct: 357 GGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSG 407



 Score = 37.7 bits (86), Expect = 0.020
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 12  QSSARITIS--EGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPP-- 67
           +S  +I I+   G  PER   +TG+  +V  A  ++   +++     PA G +    P  
Sbjct: 129 ESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK---GRPAPGFHHGDGPGN 185

Query: 68  VTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
               ++IPAS+ G +IGK G  IK+++E  G
Sbjct: 186 AVQEIMIPASKAGLVIGKGGETIKQLQERAG 216


>gi|100816392 far upstream element (FUSE) binding protein 3 [Homo
           sapiens]
          Length = 572

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 27/75 (36%), Positives = 47/75 (62%)

Query: 264 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
           ++EF VP+ ++G +IGR G +IS I+  SG  I+I +++ G  ER   +TG+P SI  A+
Sbjct: 79  TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138

Query: 324 YLITACLETAKSTSG 338
            L+   ++  ++  G
Sbjct: 139 RLLGQIVDRCRNGPG 153



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 267 FLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVSIALAQ 323
           + VP D  G VIG+ G  I  I Q SGAH+++        +   R  TI G P  I +A+
Sbjct: 359 YTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVAR 418

Query: 324 YLITACLETAKSTSGGTPSSAPADL-PAPFSPPLTALPTAPP 364
            LI           GGT   AP     +PFS      P APP
Sbjct: 419 QLI-------DEKVGGTNLGAPGAFGQSPFSQ-----PPAPP 448



 Score = 37.0 bits (84), Expect = 0.034
 Identities = 23/75 (30%), Positives = 35/75 (46%)

Query: 264 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
           S E  VP   +G VIGR G  I +I+  +G  I+       + ER   + G P     A 
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAA 314

Query: 324 YLITACLETAKSTSG 338
           ++I+  + TA+   G
Sbjct: 315 HIISELILTAQERDG 329



 Score = 36.2 bits (82), Expect = 0.058
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 12  QSSARITISEGSC--PERITTITGSTAAVFHAVSMIAFKLDEDLCA-APANGGNVSRPPV 68
           +S  +I I+  S   PER   +TG+  ++  A  ++   +D   C   P    ++     
Sbjct: 106 ESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDR--CRNGPGFHNDIDSNST 163

Query: 69  TLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
              ++IPAS+ G +IG+ G  IK+++E  G
Sbjct: 164 IQEILIPASKVGLVIGRGGETIKQLQERTG 193



 Score = 34.7 bits (78), Expect = 0.17
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAH---IKIGNQAEGAGERHVTIT 313
           D  + ++ QE L+P   +G VIGR G  I ++++ +G     I+ G    GA ++ + IT
Sbjct: 157 DIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA-DKPLRIT 215

Query: 314 GSPVSIALAQYLI 326
           G    +  A+ ++
Sbjct: 216 GDAFKVQQAREMV 228



 Score = 32.3 bits (72), Expect = 0.84
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 7   LILYLQSSARITIS----EGSCPERITTITGSTAAVFHAVSMIAFKL----DED----LC 54
           +I  +Q+ A + I     +G  PER   + G      HA  +I+  +    + D    L 
Sbjct: 275 MIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQERDGFGGLA 334

Query: 55  AAPANGG-----NVSRPPVTLRLV--IPASQCGSLIGKAGTKIKEIREVRG 98
           AA   G      +V  P     +   +PA +CG +IGK G  IK I +  G
Sbjct: 335 AARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSG 385


>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
          Length = 2603

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 264  SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
            S++  VP+ +I  VIGR G  I+ IR+ +GAHI I  Q +  G+R +TI G   S   A 
Sbjct: 1727 SKKVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRGGTESTRQAT 1786

Query: 324  YLITACLETAKS------TSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAIS 374
             LI A ++                SS+        +P  TA  T+  G+  T  A+S
Sbjct: 1787 QLINALIKDPDKEIDELIPKNRLKSSSANSKIGSSAPTTTAANTSLMGIKMTTVALS 1843


>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
          Length = 2352

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 264  SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
            S++  VP+ +I  VIGR G  I+ IR+ +GAHI I  Q +  G+R +TI G   S   A 
Sbjct: 1476 SKKVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRGGTESTRQAT 1535

Query: 324  YLITACLETAKS------TSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAIS 374
             LI A ++                SS+        +P  TA  T+  G+  T  A+S
Sbjct: 1536 QLINALIKDPDKEIDELIPKNRLKSSSANSKIGSSAPTTTAANTSLMGIKMTTVALS 1592


>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
            sapiens]
          Length = 2542

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 264  SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
            S++  VP  ++  ++GR G  I+ I+ ++GAHI +  Q +  GER +TI G   S   A 
Sbjct: 1697 SKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAV 1756

Query: 324  YLITACLE 331
             LI A ++
Sbjct: 1757 QLINALIQ 1764


>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
          Length = 2617

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 264  SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
            S++  VP  ++  ++GR G  I+ I+ ++GAHI +  Q +  GER +TI G   S   A 
Sbjct: 1697 SKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAV 1756

Query: 324  YLITACLE 331
             LI A ++
Sbjct: 1757 QLINALIQ 1764


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 59/233 (25%)

Query: 205  PSLSL-----GTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS-VVPGLDP 258
            PS+S+     G  L   +  FSV  Q GA  P+++ +L       VP +TPS +VP L P
Sbjct: 929  PSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPPSKIIQLTP-----VPVSTPSGLVPPLSP 983

Query: 259  GT----QTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 314
             T     +  Q+ L+P+           ++I+ ++   G  + +G     +    VT  G
Sbjct: 984  ATLPGPTSQPQKVLLPSS----------TRITYVQSAGGHALPLGTSPASSQAGTVTSYG 1033

Query: 315  SPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTA--LPTAPPGLLGTPYA 372
               S+AL                 G  S  P+  PA   P L+A   P   PG       
Sbjct: 1034 PTSSVAL-----------------GFTSLGPSG-PAFVQPLLSAGQAPLLAPGQ------ 1069

Query: 373  ISLSNFIGLKPMPFLALPPA--SPGPPPGLAAYTAKMAAANGSKKAERQKFSP 423
                  +G+ P+P   LPPA  +PG P   A Y+   A  + +  A+  +  P
Sbjct: 1070 ------VGVSPVPSPQLPPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPP 1116


>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
           sapiens]
          Length = 468

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 30/77 (38%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 341 PSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPP-------AS 393
           PSS P D PA FS PLT +   PPG    PY + L+      P P   L P         
Sbjct: 65  PSSGPYDCPASFSHPLTRVAPQPPGEDDAPYDVPLT------PKPPAELEPDLEWEGGRE 118

Query: 394 PGPPPGLAAYTAKMAAA 410
           PGPP   A    K A+A
Sbjct: 119 PGPPIYAAPSNLKRASA 135


>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
           sapiens]
          Length = 561

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 30/77 (38%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 341 PSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPP-------AS 393
           PSS P D PA FS PLT +   PPG    PY + L+      P P   L P         
Sbjct: 158 PSSGPYDCPASFSHPLTRVAPQPPGEDDAPYDVPLT------PKPPAELEPDLEWEGGRE 211

Query: 394 PGPPPGLAAYTAKMAAA 410
           PGPP   A    K A+A
Sbjct: 212 PGPPIYAAPSNLKRASA 228


>gi|145312259 tudor and KH domain containing isoform a [Homo
           sapiens]
          Length = 561

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 325
           E  VP + +  +IGRQG+ I ++R+ +GA I +  +  G  ER + I+G PV +  A+  
Sbjct: 56  EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQVCKAKAA 114

Query: 326 ITACLETAKSTSGGTPSSAPADLP 349
           I   L      +  TP S    +P
Sbjct: 115 IHQIL------TENTPVSEQLSVP 132



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 264 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA--GERHVTITGSPVSIAL 321
           S++  VP   +G +IGR G  I  I + SGA I    ++EG     R + I+G+   +A 
Sbjct: 126 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 185

Query: 322 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL 381
           A++LI   +   +        SA   +P      +       PG  G P A+  +    +
Sbjct: 186 AKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEP-ALWKNTSSSM 244

Query: 382 KPMPFLALPPASPG 395
           +P   L  PP   G
Sbjct: 245 EPTAPLVTPPPKGG 258



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)

Query: 12  QSSARITI-SEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTL 70
           Q+ ARI + +E    ER+  I+G    V  A + I   L E+              PV+ 
Sbjct: 81  QTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILTENT-------------PVSE 127

Query: 71  RLVIPASQCGSLIGKAGTKIKEIREVRG 98
           +L +P    G +IG+ G  I+ I +  G
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASG 155


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,212,699
Number of Sequences: 37866
Number of extensions: 1059504
Number of successful extensions: 7825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 295
Number of HSP's that attempted gapping in prelim test: 6184
Number of HSP's gapped (non-prelim): 1785
length of query: 424
length of database: 18,247,518
effective HSP length: 105
effective length of query: 319
effective length of database: 14,271,588
effective search space: 4552636572
effective search space used: 4552636572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.