Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PCBP2 Sequence: fasta or formatted (366aa) NCBI GI: 14141168
Description:

poly(rC) binding protein 2 isoform a

Referenced in:

hnRNP

Other entries for this name:
alt prot [362aa] poly(rC) binding protein 2 isoform b
alt prot [331aa] poly(rC) binding protein 2 isoform c
alt prot [365aa] poly(rC) binding protein 2 isoform d
alt prot [361aa] poly(rC) binding protein 2 isoform e
alt prot [335aa] poly(rC) binding protein 2 isoform f
alt prot [318aa] poly(rC) binding protein 2 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         26           2
 C cysteine            1.9          7           1
 D aspartate           3.0         11           1
 E glutamate           6.0         22           2
 F phenylalanine       1.6          6           1
 G glycine            10.1         37           2
 H histidine           1.6          6           1
 I isoleucine         10.1         37           2
 K lysine              4.6         17           2
 L leucine             6.6         24           2
 M methionine          3.3         12           1
 N asparagine          3.3         12           1
 P proline             6.6         24           2
 Q glutamine           5.2         19           2
 R arginine            3.8         14           1
 S serine             10.9         40           3
 T threonine           7.4         27           2
 V valine              4.9         18           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 2 isoform a 
PCBP2                 0.991   poly(rC) binding protein 2 isoform d 
PCBP2                 0.981   poly(rC) binding protein 2 isoform b 
PCBP2                 0.973   poly(rC) binding protein 2 isoform e 
PCBP2                 0.881   poly(rC) binding protein 2 isoform f 
PCBP2                 0.864   poly(rC) binding protein 2 isoform c 
PCBP2                 0.811   poly(rC) binding protein 2 isoform g 
PCBP1                 0.789   poly(rC) binding protein 1 
PCBP3                 0.654   poly(rC) binding protein 3 isoform 1 
PCBP3                 0.548   poly(rC) binding protein 3 isoform 2 
PCBP4                 0.459   poly(rC) binding protein 4 isoform c 
PCBP4                 0.459   poly(rC) binding protein 4 isoform c 
PCBP4                 0.339   poly(rC) binding protein 4 isoform a 
HNRNPK                0.187   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.185   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.185   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.112   neuro-oncological ventral antigen 1 isoform 2 
NOVA1                 0.108   neuro-oncological ventral antigen 1 isoform 1 
FUBP3                 0.082   far upstream element (FUSE) binding protein 3 [Homo...
KHSRP                 0.075   KH-type splicing regulatory protein 
NOVA2                 0.072   neuro-oncological ventral antigen 2 
IGF2BP2               0.070   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP2               0.070   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP1               0.065   insulin-like growth factor 2 mRNA binding protein 1...
IGF2BP3               0.065   insulin-like growth factor 2 mRNA binding protein 3 ...
IGF2BP1               0.065   insulin-like growth factor 2 mRNA binding protein 1 ...
FUBP1                 0.065   far upstream element-binding protein 
TDRKH                 0.043   tudor and KH domain containing isoform a 
TDRKH                 0.043   tudor and KH domain containing isoform a 
TDRKH                 0.043   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press