Guide to the Human Genome
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Name: FUBP3 Sequence: fasta or formatted (572aa) NCBI GI: 100816392
Description:

far upstream element (FUSE) binding protein 3

Referenced in:

RNA Polymerase and General Transcription Factors
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         47           3
 C cysteine            1.0          6           1
 D aspartate           4.5         26           2
 E glutamate           5.1         29           2
 F phenylalanine       3.0         17           1
 G glycine            11.4         65           3
 H histidine           1.9         11           1
 I isoleucine          7.0         40           2
 K lysine              4.2         24           2
 L leucine             4.5         26           2
 M methionine          1.9         11           1
 N asparagine          3.5         20           2
 P proline             8.0         46           3
 Q glutamine           9.3         53           2
 R arginine            6.1         35           2
 S serine              6.8         39           2
 T threonine           3.8         22           1
 V valine              6.8         39           1
 W tryptophan          0.9          5           1
 Y tyrosine            1.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   far upstream element (FUSE) binding protein 3 [Homo... 
FUBP1                 0.514   far upstream element-binding protein 
KHSRP                 0.450   KH-type splicing regulatory protein 
PCBP3                 0.056   poly(rC) binding protein 3 isoform 1 
IGF2BP2               0.054   insulin-like growth factor 2 mRNA binding protein 2 ...
PCBP2                 0.054   poly(rC) binding protein 2 isoform d 
PCBP2                 0.052   poly(rC) binding protein 2 isoform e 
PCBP2                 0.050   poly(rC) binding protein 2 isoform a 
PCBP1                 0.050   poly(rC) binding protein 1 
PCBP2                 0.049   poly(rC) binding protein 2 isoform b 
PCBP2                 0.049   poly(rC) binding protein 2 isoform f 
IGF2BP2               0.048   insulin-like growth factor 2 mRNA binding protein 2 ...
PCBP2                 0.047   poly(rC) binding protein 2 isoform c 
PCBP2                 0.046   poly(rC) binding protein 2 isoform g 
PCBP3                 0.045   poly(rC) binding protein 3 isoform 2 
IGF2BP1               0.044   insulin-like growth factor 2 mRNA binding protein 1 ...
IGF2BP3               0.044   insulin-like growth factor 2 mRNA binding protein 3 ...
TDRKH                 0.043   tudor and KH domain containing isoform a 
TDRKH                 0.043   tudor and KH domain containing isoform a 
TDRKH                 0.043   tudor and KH domain containing isoform a 
PCBP4                 0.042   poly(rC) binding protein 4 isoform c 
PCBP4                 0.042   poly(rC) binding protein 4 isoform c 
NOVA1                 0.041   neuro-oncological ventral antigen 1 isoform 2 
NOVA2                 0.039   neuro-oncological ventral antigen 2 
IGF2BP1               0.037   insulin-like growth factor 2 mRNA binding protein 1...
HNRNPK                0.034   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.034   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.034   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.032   neuro-oncological ventral antigen 1 isoform 1 
HDLBP                 0.028   high density lipoprotein binding protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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