Guide to the Human Genome
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Name: PCBP2 Sequence: fasta or formatted (331aa) NCBI GI: 148833484
Description:

poly(rC) binding protein 2 isoform c

Referenced in:

hnRNP

Other entries for this name:
alt prot [362aa] poly(rC) binding protein 2 isoform b
alt prot [366aa] poly(rC) binding protein 2 isoform a
alt prot [365aa] poly(rC) binding protein 2 isoform d
alt prot [361aa] poly(rC) binding protein 2 isoform e
alt prot [335aa] poly(rC) binding protein 2 isoform f
alt prot [318aa] poly(rC) binding protein 2 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         25           2
 C cysteine            1.8          6           1
 D aspartate           2.4          8           1
 E glutamate           6.0         20           2
 F phenylalanine       1.5          5           1
 G glycine            10.6         35           2
 H histidine           1.5          5           1
 I isoleucine         11.2         37           2
 K lysine              5.1         17           2
 L leucine             6.0         20           2
 M methionine          3.3         11           1
 N asparagine          3.3         11           1
 P proline             5.7         19           2
 Q glutamine           5.4         18           2
 R arginine            3.9         13           1
 S serine             10.3         34           3
 T threonine           6.9         23           2
 V valine              5.4         18           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 2 isoform c 
PCBP2                 0.990   poly(rC) binding protein 2 isoform f 
PCBP2                 0.973   poly(rC) binding protein 2 isoform b 
PCBP2                 0.965   poly(rC) binding protein 2 isoform a 
PCBP2                 0.963   poly(rC) binding protein 2 isoform e 
PCBP2                 0.954   poly(rC) binding protein 2 isoform d 
PCBP2                 0.941   poly(rC) binding protein 2 isoform g 
PCBP1                 0.811   poly(rC) binding protein 1 
PCBP3                 0.766   poly(rC) binding protein 3 isoform 1 
PCBP3                 0.675   poly(rC) binding protein 3 isoform 2 
PCBP4                 0.548   poly(rC) binding protein 4 isoform c 
PCBP4                 0.548   poly(rC) binding protein 4 isoform c 
PCBP4                 0.413   poly(rC) binding protein 4 isoform a 
HNRNPK                0.130   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.130   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.130   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.098   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.098   neuro-oncological ventral antigen 1 isoform 2 
FUBP3                 0.085   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP2               0.083   insulin-like growth factor 2 mRNA binding protein 2 ...
NOVA2                 0.083   neuro-oncological ventral antigen 2 
KHSRP                 0.080   KH-type splicing regulatory protein 
IGF2BP2               0.079   insulin-like growth factor 2 mRNA binding protein 2 ...
FUBP1                 0.077   far upstream element-binding protein 
IGF2BP1               0.075   insulin-like growth factor 2 mRNA binding protein 1 ...
IGF2BP3               0.074   insulin-like growth factor 2 mRNA binding protein 3 ...
IGF2BP1               0.072   insulin-like growth factor 2 mRNA binding protein 1...
BICC1                 0.069   bicaudal C homolog 1 
TDRKH                 0.048   tudor and KH domain containing isoform a 
TDRKH                 0.048   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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