Guide to the Human Genome
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Name: PCBP4 Sequence: fasta or formatted (403aa) NCBI GI: 14670373
Description:

poly(rC) binding protein 4 isoform c

Referenced in:

hnRNP

Other entries for this name:
alt mRNA [403aa] poly(rC) binding protein 4 isoform c
alt prot [424aa] poly(rC) binding protein 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         43           3
 C cysteine            1.7          7           1
 D aspartate           2.0          8           1
 E glutamate           5.2         21           3
 F phenylalanine       2.2          9           1
 G glycine             9.9         40           2
 H histidine           1.5          6           1
 I isoleucine          7.2         29           2
 K lysine              4.5         18           2
 L leucine             8.9         36           2
 M methionine          1.7          7           1
 N asparagine          2.0          8           1
 P proline             9.4         38           3
 Q glutamine           4.2         17           2
 R arginine            3.5         14           1
 S serine              9.9         40           2
 T threonine           7.7         31           2
 V valine              6.2         25           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 4 isoform c 
PCBP4                 1.000   poly(rC) binding protein 4 isoform c 
PCBP4                 0.847   poly(rC) binding protein 4 isoform a 
PCBP3                 0.463   poly(rC) binding protein 3 isoform 1 
PCBP2                 0.451   poly(rC) binding protein 2 isoform g 
PCBP2                 0.447   poly(rC) binding protein 2 isoform c 
PCBP2                 0.439   poly(rC) binding protein 2 isoform f 
PCBP2                 0.425   poly(rC) binding protein 2 isoform e 
PCBP2                 0.425   poly(rC) binding protein 2 isoform b 
PCBP2                 0.418   poly(rC) binding protein 2 isoform d 
PCBP2                 0.418   poly(rC) binding protein 2 isoform a 
PCBP3                 0.407   poly(rC) binding protein 3 isoform 2 
PCBP1                 0.392   poly(rC) binding protein 1 
HNRNPK                0.098   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.098   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.098   heterogeneous nuclear ribonucleoprotein K isoform a ...
FUBP1                 0.077   far upstream element-binding protein 
KHSRP                 0.075   KH-type splicing regulatory protein 
NOVA2                 0.072   neuro-oncological ventral antigen 2 
IGF2BP2               0.068   insulin-like growth factor 2 mRNA binding protein 2 ...
NOVA1                 0.067   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.067   neuro-oncological ventral antigen 1 isoform 2 
IGF2BP3               0.065   insulin-like growth factor 2 mRNA binding protein 3 ...
FUBP3                 0.063   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP2               0.063   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP1               0.061   insulin-like growth factor 2 mRNA binding protein 1 ...
IGF2BP1               0.052   insulin-like growth factor 2 mRNA binding protein 1...
BICC1                 0.037   bicaudal C homolog 1 
ANKRD17               0.035   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.035   ankyrin repeat domain protein 17 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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