Guide to the Human Genome
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Name: PCBP3 Sequence: fasta or formatted (345aa) NCBI GI: 194306633
Description:

poly(rC) binding protein 3 isoform 2

Referenced in:

hnRNP

Other entries for this name:
alt prot [371aa] poly(rC) binding protein 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         26           1
 C cysteine            1.4          5           1
 D aspartate           2.3          8           1
 E glutamate           6.7         23           2
 F phenylalanine       2.0          7           1
 G glycine             9.3         32           2
 H histidine           2.3          8           2
 I isoleucine          9.3         32           2
 K lysine              4.9         17           2
 L leucine             7.5         26           2
 M methionine          3.5         12           1
 N asparagine          3.8         13           1
 P proline             7.0         24           2
 Q glutamine           5.8         20           2
 R arginine            3.8         13           2
 S serine              8.7         30           2
 T threonine           8.1         28           1
 V valine              4.6         16           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 3 isoform 2 
PCBP3                 0.973   poly(rC) binding protein 3 isoform 1 
PCBP2                 0.641   poly(rC) binding protein 2 isoform c 
PCBP2                 0.639   poly(rC) binding protein 2 isoform f 
PCBP2                 0.633   poly(rC) binding protein 2 isoform g 
PCBP2                 0.592   poly(rC) binding protein 2 isoform b 
PCBP2                 0.588   poly(rC) binding protein 2 isoform e 
PCBP2                 0.581   poly(rC) binding protein 2 isoform a 
PCBP2                 0.578   poly(rC) binding protein 2 isoform d 
PCBP1                 0.556   poly(rC) binding protein 1 
PCBP4                 0.473   poly(rC) binding protein 4 isoform c 
PCBP4                 0.473   poly(rC) binding protein 4 isoform c 
PCBP4                 0.344   poly(rC) binding protein 4 isoform a 
IGF2BP2               0.107   insulin-like growth factor 2 mRNA binding protein 2 ...
HNRNPK                0.105   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.105   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.105   heterogeneous nuclear ribonucleoprotein K isoform a ...
IGF2BP2               0.096   insulin-like growth factor 2 mRNA binding protein 2 ...
NOVA1                 0.093   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.093   neuro-oncological ventral antigen 1 isoform 2 
IGF2BP1               0.088   insulin-like growth factor 2 mRNA binding protein 1 ...
IGF2BP3               0.084   insulin-like growth factor 2 mRNA binding protein 3 ...
FUBP1                 0.084   far upstream element-binding protein 
NOVA2                 0.082   neuro-oncological ventral antigen 2 
KHSRP                 0.079   KH-type splicing regulatory protein 
FUBP3                 0.078   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP1               0.072   insulin-like growth factor 2 mRNA binding protein 1...
TDRKH                 0.050   tudor and KH domain containing isoform a 
TDRKH                 0.050   tudor and KH domain containing isoform a 
TDRKH                 0.050   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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