Guide to the Human Genome
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Name: PCBP2 Sequence: fasta or formatted (318aa) NCBI GI: 193083114
Description:

poly(rC) binding protein 2 isoform g

Referenced in:

hnRNP

Other entries for this name:
alt prot [362aa] poly(rC) binding protein 2 isoform b
alt prot [366aa] poly(rC) binding protein 2 isoform a
alt prot [331aa] poly(rC) binding protein 2 isoform c
alt prot [365aa] poly(rC) binding protein 2 isoform d
alt prot [361aa] poly(rC) binding protein 2 isoform e
alt prot [335aa] poly(rC) binding protein 2 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         25           2
 C cysteine            1.9          6           1
 D aspartate           2.5          8           1
 E glutamate           5.7         18           2
 F phenylalanine       1.6          5           1
 G glycine            10.4         33           2
 H histidine           1.6          5           1
 I isoleucine         11.3         36           2
 K lysine              5.0         16           2
 L leucine             6.3         20           2
 M methionine          3.5         11           1
 N asparagine          3.5         11           1
 P proline             5.7         18           2
 Q glutamine           5.7         18           2
 R arginine            4.1         13           1
 S serine              9.7         31           3
 T threonine           7.2         23           2
 V valine              5.3         17           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 2 isoform g 
PCBP2                 0.985   poly(rC) binding protein 2 isoform c 
PCBP2                 0.975   poly(rC) binding protein 2 isoform f 
PCBP2                 0.956   poly(rC) binding protein 2 isoform b 
PCBP2                 0.955   poly(rC) binding protein 2 isoform e 
PCBP2                 0.948   poly(rC) binding protein 2 isoform a 
PCBP2                 0.945   poly(rC) binding protein 2 isoform d 
PCBP3                 0.794   poly(rC) binding protein 3 isoform 1 
PCBP1                 0.789   poly(rC) binding protein 1 
PCBP3                 0.698   poly(rC) binding protein 3 isoform 2 
PCBP4                 0.579   poly(rC) binding protein 4 isoform c 
PCBP4                 0.579   poly(rC) binding protein 4 isoform c 
PCBP4                 0.438   poly(rC) binding protein 4 isoform a 
HNRNPK                0.136   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.136   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.136   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.104   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.104   neuro-oncological ventral antigen 1 isoform 2 
IGF2BP2               0.091   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP1               0.087   insulin-like growth factor 2 mRNA binding protein 1 ...
FUBP3                 0.087   far upstream element (FUSE) binding protein 3 [Homo...
NOVA2                 0.087   neuro-oncological ventral antigen 2 
IGF2BP2               0.082   insulin-like growth factor 2 mRNA binding protein 2 ...
FUBP1                 0.081   far upstream element-binding protein 
IGF2BP3               0.081   insulin-like growth factor 2 mRNA binding protein 3 ...
KHSRP                 0.081   KH-type splicing regulatory protein 
IGF2BP1               0.076   insulin-like growth factor 2 mRNA binding protein 1...
BICC1                 0.065   bicaudal C homolog 1 
TDRKH                 0.050   tudor and KH domain containing isoform a 
TDRKH                 0.050   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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