Guide to the Human Genome
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Name: PCBP2 Sequence: fasta or formatted (335aa) NCBI GI: 193083112
Description:

poly(rC) binding protein 2 isoform f

Referenced in:

hnRNP

Other entries for this name:
alt prot [362aa] poly(rC) binding protein 2 isoform b
alt prot [366aa] poly(rC) binding protein 2 isoform a
alt prot [331aa] poly(rC) binding protein 2 isoform c
alt prot [365aa] poly(rC) binding protein 2 isoform d
alt prot [361aa] poly(rC) binding protein 2 isoform e
alt prot [318aa] poly(rC) binding protein 2 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         25           2
 C cysteine            1.8          6           1
 D aspartate           2.4          8           1
 E glutamate           6.0         20           2
 F phenylalanine       1.5          5           1
 G glycine            10.4         35           2
 H histidine           1.5          5           1
 I isoleucine         11.0         37           2
 K lysine              5.1         17           2
 L leucine             6.3         21           2
 M methionine          3.3         11           1
 N asparagine          3.3         11           1
 P proline             5.7         19           2
 Q glutamine           5.7         19           2
 R arginine            3.9         13           1
 S serine             10.4         35           3
 T threonine           7.2         24           2
 V valine              5.4         18           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 2 isoform f 
PCBP2                 0.981   poly(rC) binding protein 2 isoform c 
PCBP2                 0.975   poly(rC) binding protein 2 isoform a 
PCBP2                 0.965   poly(rC) binding protein 2 isoform d 
PCBP2                 0.956   poly(rC) binding protein 2 isoform b 
PCBP2                 0.944   poly(rC) binding protein 2 isoform e 
PCBP2                 0.922   poly(rC) binding protein 2 isoform g 
PCBP1                 0.819   poly(rC) binding protein 1 
PCBP3                 0.751   poly(rC) binding protein 3 isoform 1 
PCBP3                 0.667   poly(rC) binding protein 3 isoform 2 
PCBP4                 0.533   poly(rC) binding protein 4 isoform c 
PCBP4                 0.533   poly(rC) binding protein 4 isoform c 
PCBP4                 0.400   poly(rC) binding protein 4 isoform a 
HNRNPK                0.129   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.129   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.129   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.097   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.097   neuro-oncological ventral antigen 1 isoform 2 
FUBP3                 0.087   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP2               0.084   insulin-like growth factor 2 mRNA binding protein 2 ...
KHSRP                 0.079   KH-type splicing regulatory protein 
NOVA2                 0.079   neuro-oncological ventral antigen 2 
IGF2BP2               0.078   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP1               0.071   insulin-like growth factor 2 mRNA binding protein 1...
IGF2BP3               0.071   insulin-like growth factor 2 mRNA binding protein 3 ...
IGF2BP1               0.071   insulin-like growth factor 2 mRNA binding protein 1 ...
FUBP1                 0.071   far upstream element-binding protein 
BICC1                 0.063   bicaudal C homolog 1 
TDRKH                 0.048   tudor and KH domain containing isoform a 
TDRKH                 0.048   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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