Guide to the Human Genome
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Name: PCBP2 Sequence: fasta or formatted (361aa) NCBI GI: 193083110
Description:

poly(rC) binding protein 2 isoform e

Referenced in:

hnRNP

Other entries for this name:
alt prot [362aa] poly(rC) binding protein 2 isoform b
alt prot [366aa] poly(rC) binding protein 2 isoform a
alt prot [331aa] poly(rC) binding protein 2 isoform c
alt prot [365aa] poly(rC) binding protein 2 isoform d
alt prot [335aa] poly(rC) binding protein 2 isoform f
alt prot [318aa] poly(rC) binding protein 2 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         25           2
 C cysteine            1.9          7           1
 D aspartate           3.0         11           1
 E glutamate           6.1         22           2
 F phenylalanine       1.7          6           1
 G glycine            10.2         37           2
 H histidine           1.7          6           1
 I isoleucine         10.2         37           2
 K lysine              4.7         17           2
 L leucine             6.4         23           2
 M methionine          3.3         12           1
 N asparagine          3.3         12           1
 P proline             6.6         24           2
 Q glutamine           5.0         18           2
 R arginine            3.9         14           1
 S serine             10.8         39           3
 T threonine           7.2         26           2
 V valine              5.0         18           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 2 isoform e 
PCBP2                 0.994   poly(rC) binding protein 2 isoform b 
PCBP2                 0.991   poly(rC) binding protein 2 isoform d 
PCBP2                 0.985   poly(rC) binding protein 2 isoform a 
PCBP2                 0.874   poly(rC) binding protein 2 isoform c 
PCBP2                 0.865   poly(rC) binding protein 2 isoform f 
PCBP2                 0.827   poly(rC) binding protein 2 isoform g 
PCBP1                 0.775   poly(rC) binding protein 1 
PCBP3                 0.669   poly(rC) binding protein 3 isoform 1 
PCBP3                 0.561   poly(rC) binding protein 3 isoform 2 
PCBP4                 0.472   poly(rC) binding protein 4 isoform c 
PCBP4                 0.472   poly(rC) binding protein 4 isoform c 
PCBP4                 0.350   poly(rC) binding protein 4 isoform a 
HNRNPK                0.189   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.188   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.188   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.121   neuro-oncological ventral antigen 1 isoform 2 
NOVA1                 0.115   neuro-oncological ventral antigen 1 isoform 1 
FUBP3                 0.086   far upstream element (FUSE) binding protein 3 [Homo...
KHSRP                 0.080   KH-type splicing regulatory protein 
NOVA2                 0.076   neuro-oncological ventral antigen 2 
FUBP1                 0.074   far upstream element-binding protein 
IGF2BP2               0.071   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP2               0.071   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP1               0.065   insulin-like growth factor 2 mRNA binding protein 1...
IGF2BP3               0.065   insulin-like growth factor 2 mRNA binding protein 3 ...
IGF2BP1               0.065   insulin-like growth factor 2 mRNA binding protein 1 ...
TDRKH                 0.044   tudor and KH domain containing isoform a 
TDRKH                 0.044   tudor and KH domain containing isoform a 
TDRKH                 0.044   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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