Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 98985804
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3
[Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3 [Homo... 238 8e-64
gi|4502749 cyclin-dependent kinase inhibitor 2A isoform 1 [Homo ... 103 3e-23
gi|17981696 cyclin-dependent kinase inhibitor 2B isoform 2 [Homo... 51 2e-07
gi|17981694 cyclin-dependent kinase inhibitor 2B isoform 1 [Homo... 51 2e-07
gi|17981699 cyclin-dependent kinase inhibitor 2C [Homo sapiens] 38 0.002
gi|4502751 cyclin-dependent kinase inhibitor 2C [Homo sapiens] 38 0.002
gi|10092691 tight junction protein 3 [Homo sapiens] 34 0.022
gi|92087060 ankyrin repeat and SOCS box-containing 15 [Homo sapi... 33 0.037
gi|4502753 cyclin-dependent kinase inhibitor 2D [Homo sapiens] 33 0.048
gi|17981702 cyclin-dependent kinase inhibitor 2D [Homo sapiens] 33 0.048
gi|109150435 ankyrin repeat and zinc finger domain containing 1 ... 33 0.048
gi|109150425 ankyrin repeat and zinc finger domain containing 1 ... 33 0.048
gi|68131557 ankyrin repeat domain 28 [Homo sapiens] 33 0.063
gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform... 32 0.083
gi|157743284 ankyrin repeat domain 52 [Homo sapiens] 32 0.083
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 32 0.083
gi|14249428 leucine-rich repeats and calponin homology (CH) doma... 32 0.11
gi|55770876 notch4 preproprotein [Homo sapiens] 32 0.14
gi|62988328 ankyrin repeat domain 50 [Homo sapiens] 32 0.14
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 31 0.18
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 31 0.18
gi|215598824 ankyrin repeat and SOCS box-containing 10 isoform 2... 31 0.18
gi|215598819 ankyrin repeat and SOCS box-containing 10 isoform 1... 31 0.18
gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3... 31 0.18
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 31 0.18
gi|117938759 GNAS complex locus XLas [Homo sapiens] 31 0.24
gi|239754461 PREDICTED: similar to hCG2029702 [Homo sapiens] 31 0.24
gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo ... 31 0.24
gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo ... 31 0.24
gi|31317252 ankyrin repeat and FYVE domain containing 1 isoform ... 30 0.31
>gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3 [Homo
sapiens]
Length = 116
Score = 238 bits (607), Expect = 8e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAG 60
MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAG
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAG 60
Query: 61 DGGRLWRTKFAGELESGSASILRKKGRLPGEFSEGVCNHRPPPGDALGAWEAKEEE 116
DGGRLWRTKFAGELESGSASILRKKGRLPGEFSEGVCNHRPPPGDALGAWEAKEEE
Sbjct: 61 DGGRLWRTKFAGELESGSASILRKKGRLPGEFSEGVCNHRPPPGDALGAWEAKEEE 116
>gi|4502749 cyclin-dependent kinase inhibitor 2A isoform 1 [Homo
sapiens]
Length = 156
Score = 103 bits (257), Expect = 3e-23
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
>gi|17981696 cyclin-dependent kinase inhibitor 2B isoform 2 [Homo
sapiens]
Length = 78
Score = 51.2 bits (121), Expect = 2e-07
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 4/49 (8%)
Query: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
P+ G S E LA+AAARG VE+VR LLEAGA PN N +GRR IQV
Sbjct: 9 PSGGGSDEG----LASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQV 53
>gi|17981694 cyclin-dependent kinase inhibitor 2B isoform 1 [Homo
sapiens]
Length = 138
Score = 51.2 bits (121), Expect = 2e-07
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 4/49 (8%)
Query: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
P+ G S E LA+AAARG VE+VR LLEAGA PN N +GRR IQV
Sbjct: 9 PSGGGSDEG----LASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQV 53
>gi|17981699 cyclin-dependent kinase inhibitor 2C [Homo sapiens]
Length = 168
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 10 EPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
EP + LA+AAARG +E++ +LL+ NA N +GR +QV
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 44
>gi|4502751 cyclin-dependent kinase inhibitor 2C [Homo sapiens]
Length = 168
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 10 EPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
EP + LA+AAARG +E++ +LL+ NA N +GR +QV
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 44
>gi|10092691 tight junction protein 3 [Homo sapiens]
Length = 952
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALL--EAGALPNAPNSYGRRPIQVGRGSAAG 58
+ P G S WLA R E+ R ++ ++ A A +R + VG GS+AG
Sbjct: 541 LHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAG 600
Query: 59 AGDGGRLWR-------TKFAGELESGSASILRKKGRLP 89
+ WR K + S L ++GR P
Sbjct: 601 SNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYP 638
>gi|92087060 ankyrin repeat and SOCS box-containing 15 [Homo
sapiens]
Length = 588
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRP--IQVGRGS 55
L A G VE VR LLE G PN N G P I V +GS
Sbjct: 115 LTLAVKAGLVENVRTLLEKGVWPNTKNDKGETPLLIAVKKGS 156
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 10 EPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPI 49
+ A L AA G + + LLE G N PN G PI
Sbjct: 241 DDGASVLFEAAGGGNPDCISLLLEYGGSGNVPNRAGHLPI 280
>gi|4502753 cyclin-dependent kinase inhibitor 2D [Homo sapiens]
Length = 166
Score = 33.1 bits (74), Expect = 0.048
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 12 SADWLATAAARGRVEEVRALLEAGAL-PNAPNSYGRRPIQV 51
+ D L+ AAARG V+EVR LL + P+A N +G+ +QV
Sbjct: 8 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV 48
>gi|17981702 cyclin-dependent kinase inhibitor 2D [Homo sapiens]
Length = 166
Score = 33.1 bits (74), Expect = 0.048
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 12 SADWLATAAARGRVEEVRALLEAGAL-PNAPNSYGRRPIQV 51
+ D L+ AAARG V+EVR LL + P+A N +G+ +QV
Sbjct: 8 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV 48
>gi|109150435 ankyrin repeat and zinc finger domain containing 1
[Homo sapiens]
Length = 726
Score = 33.1 bits (74), Expect = 0.048
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAGDGGRLWRTKFAGELE 75
L AAA GR VR LLEAGA P +S R P V + R +F +E
Sbjct: 539 LHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVAADKST---------RNEFRRFME 589
Query: 76 SGSASILRKKGRLPG 90
+ K ++PG
Sbjct: 590 KNPDAYDYNKAQVPG 604
>gi|109150425 ankyrin repeat and zinc finger domain containing 1
[Homo sapiens]
Length = 726
Score = 33.1 bits (74), Expect = 0.048
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAGDGGRLWRTKFAGELE 75
L AAA GR VR LLEAGA P +S R P V + R +F +E
Sbjct: 539 LHAAAAAGRGSVVRLLLEAGADPTVQDSRARPPYTVAADKST---------RNEFRRFME 589
Query: 76 SGSASILRKKGRLPG 90
+ K ++PG
Sbjct: 590 KNPDAYDYNKAQVPG 604
>gi|68131557 ankyrin repeat domain 28 [Homo sapiens]
Length = 1053
Score = 32.7 bits (73), Expect = 0.063
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
L AA+ G + V+ LL+ G N PN+YG P+ V
Sbjct: 210 LHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHV 245
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI 49
L AAA G +E + LL GA N + +GR P+
Sbjct: 409 LHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPL 442
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 6 GSSMEPSADWLATAAARGRV----EEVRALLEAGALPNAPNSYGRRPIQV 51
G++++ W TA RG V E V ALL+ GA +S GR PI +
Sbjct: 676 GANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLLRDSRGRTPIHL 725
>gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform 1
[Homo sapiens]
Length = 1170
Score = 32.3 bits (72), Expect = 0.083
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAG 58
L AA+ G E V+ LLE GA NA ++ GR PI V S G
Sbjct: 775 LHLAASWGLEETVQCLLEFGANVNAQDAEGRTPIHVAISSQHG 817
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 7 SSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
SS + SAD ++ A + ALL+AGA PN +S GR P+ V
Sbjct: 334 SSKKHSADVMSEMA-----QIAEALLQAGANPNMQDSKGRTPLHV 373
>gi|157743284 ankyrin repeat domain 52 [Homo sapiens]
Length = 1076
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
L TAAA G++E V+ LL GA + PN++G + +
Sbjct: 210 LHTAAASGQIEVVKYLLRMGAEIDEPNAFGNTALHI 245
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 32.3 bits (72), Expect = 0.083
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 5 AGSSMEP-SADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAGDGG 63
AG +++P A A R + E A + A P RP+Q +AAG G G
Sbjct: 105 AGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGR 164
Query: 64 RLWRTKFAGE 73
L R F G+
Sbjct: 165 FLVRICFQGD 174
>gi|14249428 leucine-rich repeats and calponin homology (CH)
domain containing 3 [Homo sapiens]
Length = 712
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 20 AARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAGDGGRLWRTKFAGELESGSA 79
AA G V A +G + + N G + G S AG G G W LE +
Sbjct: 2 AAAGLVAVAAAAEYSGTVASGGNLPG---VHCGPSSGAGPGFGPGSWSRSLDRALEEAAV 58
Query: 80 S-ILRKKGRLPGEFSEGVCNH 99
+ +L GR EF G NH
Sbjct: 59 TGVLSLSGRKLREFPRGAANH 79
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI 49
L AA R R LLEAGA PN P+ GR P+
Sbjct: 1638 LHLAARFSRPTAARRLLEAGANPNQPDRAGRTPL 1671
>gi|62988328 ankyrin repeat domain 50 [Homo sapiens]
Length = 1429
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
L AA G ++ V+ LLE GA PN + +GR ++V
Sbjct: 1049 LCIAAQEGHIDVVQVLLEHGADPNHADQFGRTAMRV 1084
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 51 VGRGSAAGAGDGGRLWRTKFAGELESGSASILRKKGRLPGEFSEGVCNHRPPPGDALGAW 110
VG+G A G+GG + AGE +G + ++ R E EG P G+A
Sbjct: 136 VGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEAR---ESDEGAAGDTGPAGEAEAVG 192
Query: 111 EA 112
EA
Sbjct: 193 EA 194
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 51 VGRGSAAGAGDGGRLWRTKFAGELESGSASILRKKGRLPGEFSEGVCNHRPPPGDALGAW 110
VG+G A G+GG + AGE +G + ++ R E EG P G+A
Sbjct: 136 VGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEAR---ESDEGAAGDTGPAGEAEAVG 192
Query: 111 EA 112
EA
Sbjct: 193 EA 194
>gi|215598824 ankyrin repeat and SOCS box-containing 10 isoform 2
[Homo sapiens]
Length = 474
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRG 54
L A A G V LL AGA PN + G+RP+ + RG
Sbjct: 197 LHEACAAGHTACVHVLLVAGADPNIADQDGKRPLHLCRG 235
>gi|215598819 ankyrin repeat and SOCS box-containing 10 isoform 1
[Homo sapiens]
Length = 512
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRG 54
L A A G V LL AGA PN + G+RP+ + RG
Sbjct: 197 LHEACAAGHTACVHVLLVAGADPNIADQDGKRPLHLCRG 235
>gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3
[Homo sapiens]
Length = 452
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRG 54
L A A G V LL AGA PN + G+RP+ + RG
Sbjct: 137 LHEACAAGHTACVHVLLVAGADPNIADQDGKRPLHLCRG 175
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 2 [Homo sapiens]
Length = 1990
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI 49
L AA RG++E R LLE GA PN G P+
Sbjct: 1038 LTAAAGRGKLEVCRLLLEQGAAVAQPNRRGAVPL 1071
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVGRGSAAGAGD 61
+P AG++ E A A AAA R V P AP + R QV R ++A
Sbjct: 464 DPDAGAAPEAPA---APAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASAAPAS 520
Query: 62 GGR 64
G R
Sbjct: 521 GAR 523
>gi|239754461 PREDICTED: similar to hCG2029702 [Homo sapiens]
Length = 110
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 21 ARGRVEEVRALLEAGALPNAPNSYGRRP-------IQVGRGSAAGAGDGGRLWRTK---- 69
ARG V L AGA P + + G RP ++ RG+ G R+ R++
Sbjct: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
Query: 70 FAGELESGSASILRKKGRLP 89
+ LES S +LR GR P
Sbjct: 77 ASPRLESESGGLLRAGGRAP 96
>gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo
sapiens]
Length = 110
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 21 ARGRVEEVRALLEAGALPNAPNSYGRRP-------IQVGRGSAAGAGDGGRLWRTK---- 69
ARG V L AGA P + + G RP ++ RG+ G R+ R++
Sbjct: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
Query: 70 FAGELESGSASILRKKGRLP 89
+ LES S +LR GR P
Sbjct: 77 ASPRLESESGGLLRAGGRAP 96
>gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo
sapiens]
Length = 110
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 21 ARGRVEEVRALLEAGALPNAPNSYGRRP-------IQVGRGSAAGAGDGGRLWRTK---- 69
ARG V L AGA P + + G RP ++ RG+ G R+ R++
Sbjct: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
Query: 70 FAGELESGSASILRKKGRLP 89
+ LES S +LR GR P
Sbjct: 77 ASPRLESESGGLLRAGGRAP 96
>gi|31317252 ankyrin repeat and FYVE domain containing 1 isoform 2
[Homo sapiens]
Length = 487
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 7 SSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV 51
SS + SAD ++ A + ALL+AGA PN +S GR P+ V
Sbjct: 334 SSKKHSADVMSEMA-----QIAEALLQAGANPNMQDSKGRTPLHV 373
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,791,970
Number of Sequences: 37866
Number of extensions: 271900
Number of successful extensions: 950
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 187
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.