Guide to the Human Genome
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Name: LOC100289495 Sequence: fasta or formatted (110aa) NCBI GI: 239743023
Description:

PREDICTED: hypothetical protein XP_002342696

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         14           2
 C cysteine            0.9          1           1
 D aspartate           1.8          2           1
 E glutamate           3.6          4           1
 F phenylalanine       0.0          0           0
 G glycine            14.5         16           2
 H histidine           0.9          1           1
 I isoleucine          0.0          0           0
 K lysine              0.9          1           1
 L leucine            11.8         13           2
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline            14.5         16           2
 Q glutamine           0.9          1           1
 R arginine           14.5         16           2
 S serine              8.2          9           1
 T threonine           2.7          3           1
 V valine              6.4          7           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342696 
LOC100292528          1.000   PREDICTED: similar to hCG2029702 
LOC100291372          1.000   PREDICTED: hypothetical protein XP_002346846 
RAVER1                0.059   RAVER1 
LOC100290783          0.059   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.059   PREDICTED: hypothetical protein XP_002343435 
DRD4                  0.054   dopamine receptor D4 
LOC100291147          0.045   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.045   PREDICTED: hypothetical protein XP_002344188 
LOC100293848          0.040   PREDICTED: hypothetical protein 
BHLHA9                0.040   PREDICTED: basic helix-loop-helix family, member a9...
LOC100290829          0.040   PREDICTED: hypothetical protein XP_002346522 
BHLHA9                0.040   PREDICTED: basic helix-loop-helix family, member a9...
LOC100288535          0.040   PREDICTED: hypothetical protein XP_002342360 
HSF4                  0.040   heat shock transcription factor 4 isoform b 
HSF4                  0.040   heat shock transcription factor 4 isoform a 
AGAP2                 0.040   centaurin, gamma 1 isoform PIKE-L 
LOC100291136          0.040   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.040   PREDICTED: hypothetical protein XP_002343480 
LOC100291961          0.035   PREDICTED: hypothetical protein XP_002345135 
ATN1                  0.035   atrophin-1 
ATN1                  0.035   atrophin-1 
ERF                   0.035   Ets2 repressor factor 
BSN                   0.030   bassoon protein 
RELL2                 0.030   RELT-like 2 
RELL2                 0.030   RELT-like 2 
FLJ10357              0.030   hypothetical protein LOC55701 
CDKN2A                0.030   cyclin-dependent kinase inhibitor 2A isoform 3 [Homo...
LOC100134152          0.030   PREDICTED: similar to synaptotagmin XV-b 
ADAM15                0.025   a disintegrin and metalloproteinase domain 15 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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