Guide to the Human Genome
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Name: CDKN2B Sequence: fasta or formatted (78aa) NCBI GI: 17981696
Description:

cyclin-dependent kinase inhibitor 2B isoform 2

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [138aa] cyclin-dependent kinase inhibitor 2B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         12           3
 C cysteine            0.0          0           0
 D aspartate           2.6          2           1
 E glutamate           7.7          6           2
 F phenylalanine       1.3          1           1
 G glycine            19.2         15           3
 H histidine           0.0          0           0
 I isoleucine          2.6          2           1
 K lysine              2.6          2           1
 L leucine             5.1          4           2
 M methionine          2.6          2           1
 N asparagine          3.8          3           1
 P proline             6.4          5           1
 Q glutamine           3.8          3           1
 R arginine           16.7         13           2
 S serine              3.8          3           1
 T threonine           1.3          1           1
 V valine              5.1          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin-dependent kinase inhibitor 2B isoform 2 [Homo... 
CDKN2B                0.614   cyclin-dependent kinase inhibitor 2B isoform 1 [Homo...
CDKN2A                0.197   cyclin-dependent kinase inhibitor 2A isoform 1 
CDKN2A                0.197   cyclin-dependent kinase inhibitor 2A isoform 3 [Homo...
ANKRD50               0.114   ankyrin repeat domain 50 
CDKN2C                0.098   cyclin-dependent kinase inhibitor 2C 
CDKN2C                0.098   cyclin-dependent kinase inhibitor 2C 
CDKN2D                0.083   cyclin-dependent kinase inhibitor 2D 
CDKN2D                0.083   cyclin-dependent kinase inhibitor 2D 
ASB10                 0.061   ankyrin repeat and SOCS box-containing 10 isoform 2...
ASB10                 0.061   ankyrin repeat and SOCS box-containing 10 isoform 1...
ASB10                 0.061   ankyrin repeat and SOCS box-containing 10 isoform 3...
ANKZF1                0.061   ankyrin repeat and zinc finger domain containing 1 ...
ANKZF1                0.061   ankyrin repeat and zinc finger domain containing 1 ...
ANKRD34A              0.061   ankyrin repeat domain 34 
ANKRD52               0.053   ankyrin repeat domain 52 
ANKRD54               0.053   ankyrin repeat domain 54 
LOC441869             0.045   hypothetical protein LOC441869 
ASB16                 0.045   ankyrin repeat and SOCS box-containing protein 16 [H...
ANKRD28               0.045   ankyrin repeat domain 28 
CLPB                  0.045   caseinolytic peptidase B 
ASB7                  0.038   ankyrin repeat and SOCS box-containing protein 7 iso...
ASB15                 0.038   ankyrin repeat and SOCS box-containing 15 
ASB7                  0.038   ankyrin repeat and SOCS box-containing protein 7 iso...
NOTCH4                0.038   notch4 preproprotein 
FAM8A1                0.038   family with sequence similarity 8, member A1 
ANK2                  0.038   ankyrin 2 isoform 2 
ANK2                  0.038   ankyrin 2 isoform 1 
FEM1B                 0.030   fem-1 homolog b 
ASB9                  0.030   ankyrin repeat and SOCS box-containing 9 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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