Guide to the Human Genome
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Name: CDKN2B Sequence: fasta or formatted (138aa) NCBI GI: 17981694
Description:

cyclin-dependent kinase inhibitor 2B isoform 1

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [78aa] cyclin-dependent kinase inhibitor 2B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         20           3
 C cysteine            0.7          1           1
 D aspartate           7.2         10           1
 E glutamate           7.2         10           2
 F phenylalanine       1.4          2           1
 G glycine            12.3         17           3
 H histidine           2.9          4           1
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine            11.6         16           4
 M methionine          3.6          5           3
 N asparagine          2.9          4           1
 P proline             4.3          6           1
 Q glutamine           1.4          2           1
 R arginine           11.6         16           2
 S serine              2.9          4           1
 T threonine           3.6          5           1
 V valine              8.0         11           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin-dependent kinase inhibitor 2B isoform 1 [Homo... 
CDKN2A                0.733   cyclin-dependent kinase inhibitor 2A isoform 1 
CDKN2B                0.323   cyclin-dependent kinase inhibitor 2B isoform 2 [Homo...
CDKN2D                0.311   cyclin-dependent kinase inhibitor 2D 
CDKN2D                0.311   cyclin-dependent kinase inhibitor 2D 
CDKN2C                0.263   cyclin-dependent kinase inhibitor 2C 
CDKN2C                0.263   cyclin-dependent kinase inhibitor 2C 
ANKRD54               0.159   ankyrin repeat domain 54 
LOC441869             0.155   hypothetical protein LOC441869 
ASB15                 0.135   ankyrin repeat and SOCS box-containing 15 
ANKRD28               0.127   ankyrin repeat domain 28 
TNKS2                 0.127   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD44               0.120   ankyrin repeat domain 44 
NOTCH4                0.120   notch4 preproprotein 
TANC2                 0.120   tetratricopeptide repeat, ankyrin repeat and coiled...
DAPK1                 0.116   death-associated protein kinase 1 
TNKS                  0.116   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD50               0.116   ankyrin repeat domain 50 
ANK2                  0.116   ankyrin 2 isoform 3 
ANK2                  0.116   ankyrin 2 isoform 2 
ANK2                  0.116   ankyrin 2 isoform 1 
ASB10                 0.116   ankyrin repeat and SOCS box-containing 10 isoform 2...
ASB10                 0.116   ankyrin repeat and SOCS box-containing 10 isoform 1...
ASB10                 0.116   ankyrin repeat and SOCS box-containing 10 isoform 3...
ANKRD35               0.116   ankyrin repeat domain 35 
ANK3                  0.112   ankyrin 3 isoform 1 
NOTCH1                0.108   notch1 preproprotein 
ESPN                  0.108   espin 
CDKN2A                0.104   cyclin-dependent kinase inhibitor 2A isoform 3 [Homo...
PPP1R16A              0.104   protein phosphatase 1, regulatory (inhibitor) subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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