Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCNB2 Sequence: fasta or formatted (911aa) NCBI GI: 27436974
Description:

potassium voltage-gated channel, Shab-related subfamily, member 2

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         53           2
 C cysteine            2.2         20           2
 D aspartate           5.2         47           2
 E glutamate           8.6         78           3
 F phenylalanine       4.3         39           2
 G glycine             4.8         44           2
 H histidine           2.2         20           1
 I isoleucine          4.8         44           2
 K lysine              5.9         54           2
 L leucine             9.9         90           2
 M methionine          2.1         19           2
 N asparagine          4.4         40           2
 P proline             6.5         59           3
 Q glutamine           4.0         36           1
 R arginine            6.0         55           2
 S serine              9.7         88           4
 T threonine           6.3         57           2
 V valine              4.4         40           2
 W tryptophan          1.0          9           2
 Y tyrosine            2.1         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, Shab-related subfam... 
KCNB1                 0.550   potassium voltage-gated channel, Shab-related subfami...
KCNS3                 0.207   potassium voltage-gated channel delayed-rectifier pr...
KCNV1                 0.200   potassium channel, subfamily V, member 1 
KCNS2                 0.195   potassium voltage-gated channel, delayed-rectifier, ...
KCNS1                 0.185   potassium voltage-gated channel delayed-rectifier pr...
KCNG1                 0.185   potassium voltage-gated channel, subfamily G, member...
KCNF1                 0.185   potassium voltage-gated channel, subfamily F, member...
KCNG4                 0.178   potassium voltage-gated channel, subfamily G, member...
KCNV2                 0.170   potassium channel, subfamily V, member 2 
KCNG2                 0.165   potassium voltage-gated channel, subfamily G, member ...
KCNG3                 0.155   potassium voltage-gated channel, subfamily G, member...
KCNC1                 0.153   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.153   Shaw-related voltage-gated potassium channel protei...
KCNG3                 0.153   potassium voltage-gated channel, subfamily G, member...
KCNC4                 0.150   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.150   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.150   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.146   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.146   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.146   Shaw-related voltage-gated potassium channel protein...
KCND2                 0.145   potassium voltage-gated channel, Shal-related subfami...
KCNC3                 0.145   Shaw-related voltage-gated potassium channel protein...
KCND3                 0.141   potassium voltage-gated channel, Shal-related subfam...
KCNA10                0.141   potassium voltage-gated channel, shaker-related subfa...
KCND1                 0.140   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.140   potassium voltage-gated channel, Shal-related subfam...
KCNA1                 0.140   potassium voltage-gated channel subfamily A member ...
KCNA4                 0.137   potassium voltage-gated channel, shaker-related subfa...
KCNA2                 0.136   potassium voltage-gated channel, shaker-related subfa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press