Guide to the Human Genome
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Name: KCNS3 Sequence: fasta or formatted (491aa) NCBI GI: 25952108
Description:

potassium voltage-gated channel delayed-rectifier protein S3

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         25           3
 C cysteine            3.5         17           2
 D aspartate           6.3         31           2
 E glutamate           8.4         41           3
 F phenylalanine       5.5         27           2
 G glycine             4.3         21           2
 H histidine           2.9         14           1
 I isoleucine          7.9         39           2
 K lysine              5.3         26           2
 L leucine             9.8         48           4
 M methionine          1.8          9           1
 N asparagine          3.5         17           1
 P proline             2.9         14           1
 Q glutamine           2.9         14           1
 R arginine            3.9         19           1
 S serine              9.2         45           2
 T threonine           5.1         25           2
 V valine              6.9         34           2
 W tryptophan          1.6          8           3
 Y tyrosine            3.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel delayed-rectifier pr... 
KCNS2                 0.502   potassium voltage-gated channel, delayed-rectifier, ...
KCNS1                 0.417   potassium voltage-gated channel delayed-rectifier pr...
KCNB2                 0.386   potassium voltage-gated channel, Shab-related subfam...
KCNB1                 0.383   potassium voltage-gated channel, Shab-related subfami...
KCNV1                 0.329   potassium channel, subfamily V, member 1 
KCNV2                 0.311   potassium channel, subfamily V, member 2 
KCNF1                 0.279   potassium voltage-gated channel, subfamily F, member...
KCNG4                 0.263   potassium voltage-gated channel, subfamily G, member...
KCNG1                 0.263   potassium voltage-gated channel, subfamily G, member...
KCNG3                 0.240   potassium voltage-gated channel, subfamily G, member...
KCNG2                 0.238   potassium voltage-gated channel, subfamily G, member ...
KCNG3                 0.237   potassium voltage-gated channel, subfamily G, member...
KCNC2                 0.227   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.227   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.227   Shaw-related voltage-gated potassium channel protein...
KCNC1                 0.226   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.226   Shaw-related voltage-gated potassium channel protei...
KCNC4                 0.222   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.222   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.222   Shaw-related voltage-gated potassium channel protein...
KCND1                 0.220   potassium voltage-gated channel, Shal-related subfam...
KCND2                 0.217   potassium voltage-gated channel, Shal-related subfami...
KCND3                 0.217   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.217   potassium voltage-gated channel, Shal-related subfam...
KCNC3                 0.214   Shaw-related voltage-gated potassium channel protein...
KCNA3                 0.212   potassium voltage-gated channel, shaker-related subf...
KCNA1                 0.211   potassium voltage-gated channel subfamily A member ...
KCNA4                 0.209   potassium voltage-gated channel, shaker-related subfa...
KCNA10                0.208   potassium voltage-gated channel, shaker-related subfa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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