Guide to the Human Genome
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Name: KCNS1 Sequence: fasta or formatted (526aa) NCBI GI: 13492973
Description:

potassium voltage-gated channel delayed-rectifier protein S1

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         52           4
 C cysteine            2.3         12           2
 D aspartate           4.4         23           2
 E glutamate           6.7         35           2
 F phenylalanine       4.9         26           2
 G glycine             7.6         40           2
 H histidine           2.7         14           1
 I isoleucine          3.2         17           2
 K lysine              1.9         10           1
 L leucine            11.8         62           3
 M methionine          1.3          7           1
 N asparagine          1.9         10           1
 P proline             4.8         25           2
 Q glutamine           2.9         15           1
 R arginine            8.7         46           3
 S serine              8.0         42           2
 T threonine           4.4         23           2
 V valine              8.0         42           2
 W tryptophan          1.5          8           3
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel delayed-rectifier pr... 
KCNS2                 0.428   potassium voltage-gated channel, delayed-rectifier, ...
KCNS3                 0.393   potassium voltage-gated channel delayed-rectifier pr...
KCNB2                 0.325   potassium voltage-gated channel, Shab-related subfam...
KCNB1                 0.321   potassium voltage-gated channel, Shab-related subfami...
KCNV1                 0.282   potassium channel, subfamily V, member 1 
KCNV2                 0.261   potassium channel, subfamily V, member 2 
KCNG2                 0.254   potassium voltage-gated channel, subfamily G, member ...
KCNG1                 0.253   potassium voltage-gated channel, subfamily G, member...
KCNG4                 0.248   potassium voltage-gated channel, subfamily G, member...
KCNF1                 0.240   potassium voltage-gated channel, subfamily F, member...
KCNG3                 0.224   potassium voltage-gated channel, subfamily G, member...
KCNA7                 0.222   potassium voltage-gated channel, shaker-related subf...
KCNG3                 0.221   potassium voltage-gated channel, subfamily G, member...
KCNC1                 0.205   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.205   Shaw-related voltage-gated potassium channel protei...
KCNA3                 0.204   potassium voltage-gated channel, shaker-related subf...
KCNA1                 0.203   potassium voltage-gated channel subfamily A member ...
KCNA4                 0.200   potassium voltage-gated channel, shaker-related subfa...
KCNC4                 0.199   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.199   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.199   Shaw-related voltage-gated potassium channel protein...
KCNA2                 0.197   potassium voltage-gated channel, shaker-related subfa...
KCNC3                 0.197   Shaw-related voltage-gated potassium channel protein...
KCND1                 0.195   potassium voltage-gated channel, Shal-related subfam...
KCNA10                0.193   potassium voltage-gated channel, shaker-related subfa...
KCNC2                 0.192   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.192   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.192   Shaw-related voltage-gated potassium channel protein...
KCNA5                 0.191   potassium voltage-gated channel, shaker-related subf...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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