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Search of human proteins with 9506687
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9506687 RTP801 [Homo sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9506687 RTP801 [Homo sapiens] 462 e-130
gi|21687001 DNA-damage-inducible transcript 4-like [Homo sapiens] 106 2e-23
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 34 0.12
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 34 0.12
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 34 0.12
gi|194394158 nicotinate phosphoribosyltransferase domain contain... 34 0.12
gi|4507103 small nuclear RNA activating complex, polypeptide 2, ... 33 0.16
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 33 0.21
gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens] 33 0.27
gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens] 33 0.27
gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens] 33 0.27
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.46
gi|191252814 RIMS binding protein 3B [Homo sapiens] 32 0.60
gi|191252806 RIMS binding protein 3C [Homo sapiens] 32 0.60
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 32 0.60
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 31 0.79
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 31 1.0
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 31 1.0
gi|10047086 mitogen-inducible gene 6 protein [Homo sapiens] 31 1.0
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 31 1.0
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 30 1.8
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 30 1.8
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 30 1.8
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 30 1.8
gi|166362732 ELK1 protein [Homo sapiens] 30 2.3
gi|166362730 ELK1 protein [Homo sapiens] 30 2.3
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 30 2.3
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 30 2.3
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 29 3.0
gi|189491742 ataxin 7 isoform b [Homo sapiens] 29 3.0
>gi|9506687 RTP801 [Homo sapiens]
Length = 232
Score = 462 bits (1189), Expect = e-130
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS 60
MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS
Sbjct: 1 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS 60
Query: 61 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP 120
NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP
Sbjct: 61 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP 120
Query: 121 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR 180
SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR
Sbjct: 121 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR 180
Query: 181 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 232
LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
Sbjct: 181 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 232
>gi|21687001 DNA-damage-inducible transcript 4-like [Homo sapiens]
Length = 193
Score = 106 bits (264), Expect = 2e-23
Identities = 63/180 (35%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 48 SLESSDCESLDSS-NSGFGPEE---DTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQES 103
SL S + S+ + G+ PE D Y D V +P+ L +E C NL+++L+
Sbjct: 6 SLSSKNPASISELLDCGYHPESLLSDFDYWDYV-VPEPNLNEVIFEESTCQNLVKMLENC 64
Query: 104 LAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQL 163
L++++ +++L+P +L ++ +++LRL+ +EPCGLRG ++ V +E C + ++
Sbjct: 65 LSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDRI 124
Query: 164 ALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYS 223
D S+VPTF+LTLV + ++ W + F S F GF ++L LS+GFR++KKKLYS
Sbjct: 125 VCDSSVVPTFELTLVFKQENCSWTSFRDFFFS-RGRFSSGFRRTLILSSGFRLVKKKLYS 183
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 PSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSN 61
P+L SSSS+SSS SS + +P PP SA S G + SL + + N
Sbjct: 848 PTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVV-SSGDNLEASLPMISFKQEELEN 906
Query: 62 SGFGPEED 69
G P E+
Sbjct: 907 EGLKPREE 914
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 PSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSN 61
P+L SSSS+SSS SS + +P PP SA S G + SL + + N
Sbjct: 1049 PTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVV-SSGDNLEASLPMISFKQEELEN 1107
Query: 62 SGFGPEED 69
G P E+
Sbjct: 1108 EGLKPREE 1115
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 PSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSN 61
P+L SSSS+SSS SS + +P PP SA S G + SL + + N
Sbjct: 1049 PTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVV-SSGDNLEASLPMISFKQEELEN 1107
Query: 62 SGFGPEED 69
G P E+
Sbjct: 1108 EGLKPREE 1115
>gi|194394158 nicotinate phosphoribosyltransferase domain containing
1 [Homo sapiens]
Length = 538
Score = 33.9 bits (76), Expect = 0.12
Identities = 43/128 (33%), Positives = 57/128 (44%), Gaps = 26/128 (20%)
Query: 79 PDFELLSDPEDEHLCANLMQLLQESLAQARL----GSRRPARLLMPSQLVSQVGKELLRL 134
P +L DPE Q L S A RL GS L + + V Q G+EL
Sbjct: 404 PRMKLTEDPEK--------QTLPGSKAAFRLLGSDGSPLMDMLQLAEEPVPQAGQELRVW 455
Query: 135 --AYSEPCGLRGA----LLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLWPK 188
EPC +R A LL +C++QG+ C + LA +L QL+L SRL P+
Sbjct: 456 PPGAQEPCTVRPAQVEPLLRLCLQQGQLCEPLPSLAESRALA---QLSL-----SRLSPE 507
Query: 189 IQGLFSSA 196
+ L S A
Sbjct: 508 HRRLRSPA 515
>gi|4507103 small nuclear RNA activating complex, polypeptide 2,
45kDa [Homo sapiens]
Length = 334
Score = 33.5 bits (75), Expect = 0.16
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 11 SSTSSSPSSLPRT--PTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SS ++PSS PRT P P++P S+ G +T E D + E S SG PE
Sbjct: 169 SSAPAAPSSAPRTPDPAPEKPSESSAGPSTEE---DFAVDFEKIYKYLSSVSRSGRSPEL 225
Query: 69 DTAYLDGVSLPDFELLSDPEDEHL--CANLMQLLQES 103
A + + D L+S PE+ L C L++ + E+
Sbjct: 226 SAA--ESAVVLDL-LMSLPEELPLLPCTALVEHMTET 259
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 33.1 bits (74), Expect = 0.21
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 13/158 (8%)
Query: 6 DRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLE--SSDCESLDSSNSG 63
+R++ SSTS+S S+P TP+ A EE RS +L+ SS +
Sbjct: 891 ERYTPSSTSASEFSVPPYATPE---------AQEEEIVHRSLNLKGASSPMNLSEEDQED 941
Query: 64 FGP-EEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMPSQ 122
GP D+A++ S P + + E C + + L S L
Sbjct: 942 IGPFSPDSAFVSEFSFPPYATQEAEKREFECDSPICLTSPSEHTILSDEDTEEAELFSPD 1001
Query: 123 LVSQVGKELLRLAYSEPCGLR-GALLDVCVEQGKSCHS 159
SQV R++ +E L +LL G SC S
Sbjct: 1002 SASQVSIPPFRISETEKNELEPDSLLTAVSASGYSCFS 1039
>gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 32.7 bits (73), Expect = 0.27
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 17 PSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSG--FGPEEDTAYLD 74
P+ P +PTP PPR EE D T E+S E L S++G F +ED D
Sbjct: 82 PAPQPPSPTPS-PPRPTLAREDNEEDEDEPTETETSG-EQLGISDNGGLFVMDEDATLQD 139
Query: 75 GVSLPDFELLSDPE 88
LP F SDPE
Sbjct: 140 ---LPPF-CESDPE 149
>gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 32.7 bits (73), Expect = 0.27
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 17 PSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSG--FGPEEDTAYLD 74
P+ P +PTP PPR EE D T E+S E L S++G F +ED D
Sbjct: 82 PAPQPPSPTPS-PPRPTLAREDNEEDEDEPTETETSG-EQLGISDNGGLFVMDEDATLQD 139
Query: 75 GVSLPDFELLSDPE 88
LP F SDPE
Sbjct: 140 ---LPPF-CESDPE 149
>gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 32.7 bits (73), Expect = 0.27
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 17 PSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSG--FGPEEDTAYLD 74
P+ P +PTP PPR EE D T E+S E L S++G F +ED D
Sbjct: 82 PAPQPPSPTPS-PPRPTLAREDNEEDEDEPTETETSG-EQLGISDNGGLFVMDEDATLQD 139
Query: 75 GVSLPDFELLSDPE 88
LP F SDPE
Sbjct: 140 ---LPPF-CESDPE 149
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.0 bits (71), Expect = 0.46
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SSSS+SSS SS + + S+ S++ S+S SS S SS+S +E
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDE 2675
Query: 69 DTA 71
D++
Sbjct: 2676 DSS 2678
Score = 31.6 bits (70), Expect = 0.60
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SSSS+SSS SS + + S+ S++ S+S SS S SS+S E+
Sbjct: 2617 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDED 2676
Query: 69 DTAYLDGVSLP 79
+ D + P
Sbjct: 2677 SSCSSDDEAAP 2687
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SSSS+SSS SS + + S+ S++ S+S SS S SS+S
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673
Query: 69 D 69
D
Sbjct: 2674 D 2674
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 31.6 bits (70), Expect = 0.60
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 6 DRFSSSSTSSSPS---SLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
+R SS TS+ S S P +P P PP SA + G + S ES CE L S
Sbjct: 310 ERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGS---ESQPCEVLTPSPP 366
Query: 63 GFGPEE 68
G G E
Sbjct: 367 GLGHHE 372
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 31.6 bits (70), Expect = 0.60
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 6 DRFSSSSTSSSPS---SLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
+R SS TS+ S S P +P P PP SA + G + S ES CE L S
Sbjct: 310 ERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGS---ESQPCEVLTPSPP 366
Query: 63 GFGPEE 68
G G E
Sbjct: 367 GLGHHE 372
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 31.6 bits (70), Expect = 0.60
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 6 DRFSSSSTSSSPS---SLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
+R SS TS+ S S P +P P PP SA + G + S ES CE L S
Sbjct: 310 ERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGS---ESQPCEVLTPSPP 366
Query: 63 GFGPEE 68
G G E
Sbjct: 367 GLGHHE 372
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 31.2 bits (69), Expect = 0.79
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 8 FSSSSTSSSPSSLPRTPTP-------DRPPRSAWGSATREEGFDRSTSLESSDCESLDSS 60
+ S + S SS R +P RP RS GS +R S S+ SS S DSS
Sbjct: 237 YQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS-SSSDSISSSSSTSSDSS 295
Query: 61 NSGFGPEED----TAYLDGVSLPDFELLSDPEDE 90
+S +D + V P +LLS E +
Sbjct: 296 DSSSSSSDDSPARSVQSAAVPAPTSQLLSSLEKD 329
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 30.8 bits (68), Expect = 1.0
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SSSS+SSS SS +P+ S+ S+ EG + +S S + + +
Sbjct: 462 SSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSGARREGRHRAPVTFD 521
Query: 69 DTAYLDGVSLPDFELLSDPEDE 90
++ L +SL F LL++ +D+
Sbjct: 522 ESGSLPFLSLAQFFLLNEDDDD 543
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 30.8 bits (68), Expect = 1.0
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SSSS+SSS SS +P+ S+ S+ EG + +S S + + +
Sbjct: 462 SSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSGARREGRHRAPVTFD 521
Query: 69 DTAYLDGVSLPDFELLSDPEDE 90
++ L +SL F LL++ +D+
Sbjct: 522 ESGSLPFLSLAQFFLLNEDDDD 543
>gi|10047086 mitogen-inducible gene 6 protein [Homo sapiens]
Length = 462
Score = 30.8 bits (68), Expect = 1.0
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 7 RFSSSSTSSSPSSLPRTPTPDRPPR---SAWGSATREEGF-DRSTSLESSDCESLDSSNS 62
R S +S P PR P P RP + W + + D + E L SNS
Sbjct: 271 RASPNSDEDKPEVPPRVPIPPRPVKPDYRRWSAEVTSSTYSDEDRPPKVPPREPLSPSNS 330
Query: 63 GF-GPEEDTAYLDGVSLPDFELLSDPE 88
P+ +YL+GV P DP+
Sbjct: 331 RTPSPKSLPSYLNGVMPPTQSFAPDPK 357
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 30.8 bits (68), Expect = 1.0
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 6 DRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSD-CESLDSSNSGF 64
D SS S SSS S + + D + S+ + D S S +SSD +S DS +
Sbjct: 568 DSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSS 627
Query: 65 GPEEDTAYLDGVSLPDFELLSDPED 89
E D++ D S SD D
Sbjct: 628 KSESDSSDSDSKSDSSDSNSSDSSD 652
Score = 30.4 bits (67), Expect = 1.3
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 6 DRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFG 65
D SS +S S SS + + D S S+ E D S S +S +S DSSNS
Sbjct: 667 DSSDSSDSSDSSSSSDSSNSSDSSDSS--DSSNSSESSDSSDSSDSDSSDSSDSSNSNSS 724
Query: 66 PEEDTAYLDGVSLPDFELLSDPED 89
+ + D + SD D
Sbjct: 725 DSDSSNSSDSSDSSNSSDSSDSSD 748
Score = 30.0 bits (66), Expect = 1.8
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSGFGPEE 68
SS S+ SS SS + + + S+ + S S +SSD +S DSS+S
Sbjct: 665 SSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSS 724
Query: 69 DTAYLDGVSLPDFELLSDPEDEHLCAN 95
D+ + D SD D +N
Sbjct: 725 DSDSSNSSDSSDSSNSSDSSDSSDSSN 751
Score = 28.9 bits (63), Expect = 3.9
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDC-ESLDSSNSGFGPE 67
SS S+ SS SS + + S+ + D S S +SSD ES DSS+S +
Sbjct: 1186 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSD 1245
Query: 68 EDTAYLDGVSLPDFELLSDPEDE 90
+ S + SD DE
Sbjct: 1246 SSNSSDSSDSSDSSDSTSDSNDE 1268
Score = 28.1 bits (61), Expect = 6.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 6 DRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
+R SS++S S S + + D S ++ D S S SSD +S DSSNS
Sbjct: 857 NRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSS--DSSDSSNSSDSDSSDSSNS 911
Score = 27.7 bits (60), Expect = 8.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 10 SSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
SS + SS SS + S+ +++ + S S +SSD +S DSSNS
Sbjct: 549 SSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNS 601
Score = 27.7 bits (60), Expect = 8.7
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 6 DRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
D +SS +S S S + + D + S + + D + +SSD S DSS++
Sbjct: 597 DSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDN 653
Score = 27.7 bits (60), Expect = 8.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
SS+S+ +S SS + + S+ D S S +SSD S DSS+S
Sbjct: 926 SSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDS 979
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPRSAW-GSATREEGFDRSTSLESSDCESLDSSNS 62
SSSS+SSS SS R+ + PP W S+ G R S SS S SS+S
Sbjct: 1441 SSSSSSSSSSSRSRSRSLS-PPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSS 1494
Score = 28.1 bits (61), Expect = 6.7
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 9 SSSSTSSSPS-SLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNS 62
SSSS+SSS S S +P R RS+ S+ R S+S SS S SS+S
Sbjct: 1444 SSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSS 1498
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 30.0 bits (66), Expect = 1.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 9 SSSSTSSSPSSLPRTPTPDRPPR 31
++ STSSS +S P P+P RPPR
Sbjct: 2699 AAPSTSSSATSSPEGPSPARPPR 2721
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 30.0 bits (66), Expect = 1.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 8 FSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLD--SSNSGFG 65
F SS TSS S P T +++GS T E + +S E + S + SSN+
Sbjct: 150 FQSSQTSSVSSVNPSVTTIKTIEENSFGSQTHEAASNSDSSHEGQEESSKENVSSNAACP 209
Query: 66 PEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLA 105
T DG S EL + + L N +Q L + +A
Sbjct: 210 DHTPTPNDDGKS---HELSNLRLENQLLRNEVQSLNQEMA 246
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 23 TPTPDRPPRSAWGSATREEGFDRSTSLESSDCESL 57
TP PD PP A+RE RS+SL+ D SL
Sbjct: 1198 TPRPDHPPHDGHSPASRE----RSSSLQGMDMASL 1228
>gi|166362732 ELK1 protein [Homo sapiens]
Length = 428
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 164 ALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPFLP 202
AL PSL+PT LT VL S L P I F S SP P
Sbjct: 351 ALTPSLLPTHTLTPVLLTPSSLPPSIH--FWSTLSPIAP 387
>gi|166362730 ELK1 protein [Homo sapiens]
Length = 428
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 164 ALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPFLP 202
AL PSL+PT LT VL S L P I F S SP P
Sbjct: 351 ALTPSLLPTHTLTPVLLTPSSLPPSIH--FWSTLSPIAP 387
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPP 30
+PS R S T++ P+ +PR P P RPP
Sbjct: 103 IPSQVGRDGVSRTTAGPTPIPRAPRPWRPP 132
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPP 30
+PS R S T++ P+ +PR P P RPP
Sbjct: 103 IPSQVGRDGVSRTTAGPTPIPRAPRPWRPP 132
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 10 SSSTSSSPSSLPRTPTPDRPPRSAWGSATREEG-FDRSTSLESSDCESLDSSNSGFGPEE 68
S ST +SP + P+P+ P + A+ + G D+S++ S +S + SN P+E
Sbjct: 2102 SISTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQE 2161
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 SSSSTSSSP---SSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSSNSG 63
SSSS+ S+P SS+P +P +P + + R + +S S++C++ SS SG
Sbjct: 648 SSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLR----PKESSGNSTNCQNASSSTSG 701
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,571,101
Number of Sequences: 37866
Number of extensions: 448923
Number of successful extensions: 2356
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2222
Number of HSP's gapped (non-prelim): 138
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.