Guide to the Human Genome
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Name: DDIT4 Sequence: fasta or formatted (232aa) NCBI GI: 9506687
Description:

RTP801

Referenced in:

Oxygen Sensing and Hemoglobin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         11           1
 C cysteine            2.6          6           1
 D aspartate           5.6         13           1
 E glutamate           6.9         16           2
 F phenylalanine       3.9          9           1
 G glycine             6.0         14           1
 H histidine           0.9          2           1
 I isoleucine          1.3          3           1
 K lysine              2.6          6           3
 L leucine            16.4         38           2
 M methionine          1.3          3           1
 N asparagine          1.3          3           1
 P proline             7.8         18           2
 Q glutamine           4.7         11           1
 R arginine            6.5         15           2
 S serine             16.8         39           4
 T threonine           4.3         10           1
 V valine              3.9          9           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RTP801 
DDIT4L                0.185   DNA-damage-inducible transcript 4-like 
PRDM2                 0.021   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.021   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.021   retinoblastoma protein-binding zinc finger protein i...
NAPRT1                0.021   nicotinate phosphoribosyltransferase domain contain...
SNAPC2                0.018   small nuclear RNA activating complex, polypeptide 2, ...
CMYA5                 0.018   cardiomyopathy associated 5 
AKT1S1                0.018   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.018   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.018   AKT1 substrate 1 (proline-rich) 
TNRC18                0.016   trinucleotide repeat containing 18 
RIMBP3B               0.016   RIMS binding protein 3B 
RIMBP3C               0.016   RIMS binding protein 3C 
RIMBP3                0.016   DKFZP434H0735 protein 
SPEN                  0.014   spen homolog, transcriptional regulator 
RLIM                  0.014   ring finger protein, LIM domain interacting 
RLIM                  0.014   ring finger protein, LIM domain interacting 
ERRFI1                0.014   mitogen-inducible gene 6 protein 
DSPP                  0.014   dentin sialophosphoprotein preproprotein 
PPRC1                 0.011   peroxisome proliferator-activated receptor gamma, co...
SRCAP                 0.011   Snf2-related CBP activator protein 
GOLGA5                0.011   Golgi autoantigen, golgin subfamily a, 5 
WDR33                 0.011   WD repeat domain 33 isoform 1 
ELK1                  0.011   ELK1 protein 
ELK1                  0.011   ELK1 protein 
LOC100131098          0.011   PREDICTED: hypothetical protein 
LOC100131098          0.011   PREDICTED: hypothetical protein 
TTC28                 0.009   tetratricopeptide repeat domain 28 
ATXN7                 0.009   ataxin 7 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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