Guide to the Human Genome
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Name: FAM63A Sequence: fasta or formatted (469aa) NCBI GI: 31377841
Description:

hypothetical protein LOC55793 isoform 1

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [517aa] hypothetical protein LOC55793 isoform 3
alt prot [374aa] hypothetical protein LOC55793 isoform 4
alt prot [327aa] hypothetical protein LOC55793 isoform 2
alt prot [327aa] hypothetical protein LOC55793 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         32           3
 C cysteine            2.3         11           1
 D aspartate           5.5         26           2
 E glutamate           8.5         40           2
 F phenylalanine       2.8         13           2
 G glycine             7.0         33           2
 H histidine           3.0         14           1
 I isoleucine          3.2         15           2
 K lysine              3.6         17           1
 L leucine            11.7         55           2
 M methionine          1.5          7           1
 N asparagine          2.8         13           2
 P proline             8.1         38           2
 Q glutamine           8.5         40           4
 R arginine            4.1         19           2
 S serine              6.4         30           2
 T threonine           5.8         27           2
 V valine              5.3         25           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55793 isoform 1 
FAM63A                1.000   hypothetical protein LOC55793 isoform 3 
FAM63A                0.790   hypothetical protein LOC55793 isoform 4 
FAM63A                0.679   hypothetical protein LOC55793 isoform 2 
FAM63A                0.679   hypothetical protein LOC55793 isoform 2 
FAM63B                0.429   hypothetical protein LOC54629 isoform a 
FAM63B                0.426   hypothetical protein LOC54629 isoform b 
UPF2                  0.018   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.018   UPF2 regulator of nonsense transcripts homolog [Homo...
MLL2                  0.014   myeloid/lymphoid or mixed-lineage leukemia 2 
RP1L1                 0.013   retinitis pigmentosa 1-like 1 
AATK                  0.012   apoptosis-associated tyrosine kinase 
WIPF3                 0.012   WAS/WASL interacting protein family, member 3 [Homo...
RAD54L2               0.012   RAD54-like 2 
HERC1                 0.012   guanine nucleotide exchange factor p532 
DBN1                  0.011   drebrin 1 isoform b 
DBN1                  0.011   drebrin 1 isoform a 
CASKIN2               0.011   cask-interacting protein 2 isoform b 
CASKIN2               0.011   cask-interacting protein 2 isoform a 
PHACTR4               0.011   phosphatase and actin regulator 4 isoform 2 
PHACTR4               0.011   phosphatase and actin regulator 4 isoform 1 
MAST1                 0.011   microtubule associated serine/threonine kinase 1 [Ho...
C15orf39              0.011   hypothetical protein LOC56905 
POU3F2                0.010   POU domain, class 3, transcription factor 2 
MINK1                 0.010   misshapen/NIK-related kinase isoform 4 
ACIN1                 0.010   apoptotic chromatin condensation inducer 1 
PHC1                  0.010   polyhomeotic 1-like 
FAM123B               0.009   family with sequence similarity 123B 
LOC100130736          0.009   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.009   PREDICTED: similar to tubulin, beta 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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