Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM63A Sequence: fasta or formatted (517aa) NCBI GI: 253795488
Description:

hypothetical protein LOC55793 isoform 3

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [374aa] hypothetical protein LOC55793 isoform 4
alt prot [327aa] hypothetical protein LOC55793 isoform 2
alt prot [469aa] hypothetical protein LOC55793 isoform 1
alt prot [327aa] hypothetical protein LOC55793 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         35           3
 C cysteine            2.5         13           1
 D aspartate           5.0         26           2
 E glutamate           8.1         42           2
 F phenylalanine       2.9         15           2
 G glycine             6.6         34           2
 H histidine           3.1         16           1
 I isoleucine          2.9         15           2
 K lysine              3.9         20           1
 L leucine            11.8         61           2
 M methionine          1.5          8           1
 N asparagine          2.7         14           2
 P proline             8.9         46           3
 Q glutamine           8.3         43           4
 R arginine            3.9         20           2
 S serine              7.4         38           2
 T threonine           5.6         29           2
 V valine              5.2         27           2
 W tryptophan          1.2          6           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55793 isoform 3 
FAM63A                0.903   hypothetical protein LOC55793 isoform 1 
FAM63A                0.713   hypothetical protein LOC55793 isoform 4 
FAM63A                0.614   hypothetical protein LOC55793 isoform 2 
FAM63A                0.614   hypothetical protein LOC55793 isoform 2 
FAM63B                0.388   hypothetical protein LOC54629 isoform a 
FAM63B                0.385   hypothetical protein LOC54629 isoform b 
UPF2                  0.016   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.016   UPF2 regulator of nonsense transcripts homolog [Homo...
SCARF2                0.015   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.015   scavenger receptor class F, member 2 isoform 2 [Homo...
PHACTR4               0.014   phosphatase and actin regulator 4 isoform 2 
PHACTR4               0.014   phosphatase and actin regulator 4 isoform 1 
RAD54L2               0.014   RAD54-like 2 
SCAF1                 0.013   SR-related CTD-associated factor 1 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
PTPN23                0.012   protein tyrosine phosphatase, non-receptor type 23 [...
RP1L1                 0.012   retinitis pigmentosa 1-like 1 
AATK                  0.011   apoptosis-associated tyrosine kinase 
WIPF3                 0.011   WAS/WASL interacting protein family, member 3 [Homo...
SFPQ                  0.011   splicing factor proline/glutamine rich (polypyrimidin...
HERC1                 0.011   guanine nucleotide exchange factor p532 
PRDM9                 0.010   PR domain containing 9 
DBN1                  0.010   drebrin 1 isoform b 
DBN1                  0.010   drebrin 1 isoform a 
CASKIN2               0.010   cask-interacting protein 2 isoform b 
CASKIN2               0.010   cask-interacting protein 2 isoform a 
MAST1                 0.010   microtubule associated serine/threonine kinase 1 [Ho...
C15orf39              0.010   hypothetical protein LOC56905 
POU3F2                0.009   POU domain, class 3, transcription factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press