Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM63A Sequence: fasta or formatted (327aa) NCBI GI: 253795492
Description:

hypothetical protein LOC55793 isoform 2

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [517aa] hypothetical protein LOC55793 isoform 3
alt prot [374aa] hypothetical protein LOC55793 isoform 4
alt prot [469aa] hypothetical protein LOC55793 isoform 1
alt mRNA [327aa] hypothetical protein LOC55793 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         18           3
 C cysteine            2.1          7           1
 D aspartate           5.2         17           2
 E glutamate           7.3         24           2
 F phenylalanine       3.7         12           2
 G glycine             7.3         24           2
 H histidine           3.4         11           1
 I isoleucine          2.8          9           2
 K lysine              4.3         14           1
 L leucine            13.8         45           2
 M methionine          1.5          5           1
 N asparagine          3.1         10           2
 P proline             4.6         15           2
 Q glutamine           9.5         31           4
 R arginine            4.0         13           2
 S serine              7.0         23           2
 T threonine           5.5         18           2
 V valine              6.4         21           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55793 isoform 2 
FAM63A                1.000   hypothetical protein LOC55793 isoform 4 
FAM63A                1.000   hypothetical protein LOC55793 isoform 3 
FAM63A                1.000   hypothetical protein LOC55793 isoform 1 
FAM63A                1.000   hypothetical protein LOC55793 isoform 2 
FAM63B                0.553   hypothetical protein LOC54629 isoform a 
FAM63B                0.549   hypothetical protein LOC54629 isoform b 
UPF2                  0.027   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.027   UPF2 regulator of nonsense transcripts homolog [Homo...
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
POU3F2                0.014   POU domain, class 3, transcription factor 2 
PHC1                  0.014   polyhomeotic 1-like 
LOC100130736          0.013   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.013   PREDICTED: similar to tubulin, beta 5 
MLL3                  0.011   myeloid/lymphoid or mixed-lineage leukemia 3 
MED15                 0.011   mediator complex subunit 15 isoform a 
MED15                 0.011   mediator complex subunit 15 isoform b 
ZNF853                0.011   zinc finger protein 853 
CHD1                  0.009   chromodomain helicase DNA binding protein 1 
GLG1                  0.008   golgi apparatus protein 1 isoform 3 
GLG1                  0.008   golgi apparatus protein 1 isoform 2 
GLG1                  0.008   golgi apparatus protein 1 isoform 1 
FOXP2                 0.008   forkhead box P2 isoform I 
FOXP2                 0.008   forkhead box P2 isoform III 
FOXP2                 0.008   forkhead box P2 isoform II 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform b 
LOC653924             0.008   PREDICTED: similar to hCG1732629 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press