Guide to the Human Genome
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Name: FAM63A Sequence: fasta or formatted (374aa) NCBI GI: 253795490
Description:

hypothetical protein LOC55793 isoform 4

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [517aa] hypothetical protein LOC55793 isoform 3
alt prot [327aa] hypothetical protein LOC55793 isoform 2
alt prot [469aa] hypothetical protein LOC55793 isoform 1
alt prot [327aa] hypothetical protein LOC55793 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         19           3
 C cysteine            2.4          9           1
 D aspartate           4.8         18           2
 E glutamate           7.2         27           2
 F phenylalanine       3.5         13           2
 G glycine             7.0         26           2
 H histidine           2.9         11           1
 I isoleucine          3.5         13           2
 K lysine              4.3         16           1
 L leucine            12.8         48           2
 M methionine          1.6          6           1
 N asparagine          2.9         11           2
 P proline             6.4         24           2
 Q glutamine           9.6         36           4
 R arginine            4.0         15           2
 S serine              6.7         25           2
 T threonine           5.9         22           2
 V valine              5.9         22           2
 W tryptophan          1.3          5           1
 Y tyrosine            2.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55793 isoform 4 
FAM63A                1.000   hypothetical protein LOC55793 isoform 3 
FAM63A                1.000   hypothetical protein LOC55793 isoform 1 
FAM63A                0.861   hypothetical protein LOC55793 isoform 2 
FAM63A                0.861   hypothetical protein LOC55793 isoform 2 
FAM63B                0.544   hypothetical protein LOC54629 isoform a 
FAM63B                0.540   hypothetical protein LOC54629 isoform b 
UPF2                  0.023   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.023   UPF2 regulator of nonsense transcripts homolog [Homo...
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
POU3F2                0.012   POU domain, class 3, transcription factor 2 
PHC1                  0.012   polyhomeotic 1-like 
LOC100130736          0.011   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.011   PREDICTED: similar to tubulin, beta 5 
MLL3                  0.009   myeloid/lymphoid or mixed-lineage leukemia 3 
MED15                 0.009   mediator complex subunit 15 isoform a 
MED15                 0.009   mediator complex subunit 15 isoform b 
ZNF853                0.009   zinc finger protein 853 
ZNF232                0.009   zinc finger protein 232 
CHD1                  0.008   chromodomain helicase DNA binding protein 1 
GLG1                  0.007   golgi apparatus protein 1 isoform 3 
GLG1                  0.007   golgi apparatus protein 1 isoform 2 
GLG1                  0.007   golgi apparatus protein 1 isoform 1 
FOXP2                 0.007   forkhead box P2 isoform I 
FOXP2                 0.007   forkhead box P2 isoform III 
FOXP2                 0.007   forkhead box P2 isoform II 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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