Guide to the Human Genome
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Name: VAPA Sequence: fasta or formatted (249aa) NCBI GI: 94721252
Description:

vesicle-associated membrane protein-associated protein A isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [294aa] vesicle-associated membrane protein-associated protein A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         14           2
 C cysteine            1.6          4           1
 D aspartate           6.8         17           1
 E glutamate           6.0         15           2
 F phenylalanine       4.8         12           2
 G glycine             4.0         10           1
 H histidine           2.0          5           1
 I isoleucine          3.2          8           2
 K lysine              9.2         23           1
 L leucine             8.8         22           2
 M methionine          4.8         12           2
 N asparagine          4.8         12           1
 P proline             8.4         21           2
 Q glutamine           2.0          5           1
 R arginine            5.2         13           2
 S serine              8.0         20           1
 T threonine           6.0         15           2
 V valine              7.2         18           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vesicle-associated membrane protein-associated prote... 
VAPA                  0.954   vesicle-associated membrane protein-associated prote...
VAPB                  0.574   VAMP-associated protein B/C 
MOSPD2                0.061   motile sperm domain containing 2 
ZBTB26                0.017   zinc finger and BTB domain containing 26 
MOSPD3                0.017   motile sperm domain containing 3 isoform a 
MOSPD3                0.017   motile sperm domain containing 3 isoform a 
MOSPD3                0.017   motile sperm domain containing 3 isoform a 
MOSPD3                0.017   motile sperm domain containing 3 isoform b 
SIPA1L1               0.015   signal-induced proliferation-associated 1 like 1 [Hom...
PRRT2                 0.015   proline-rich transmembrane protein 2 
CCDC108               0.015   coiled-coil domain containing 108 isoform 1 
PPFIA1                0.013   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.013   PTPRF interacting protein alpha 1 isoform b 
C14orf145             0.013   hypothetical protein LOC145508 
TRIP11                0.013   thyroid hormone receptor interactor 11 
IQSEC2                0.013   IQ motif and Sec7 domain 2 isoform1 
CCDC6                 0.013   coiled-coil domain containing 6 
TMC1                  0.010   transmembrane channel-like 1 
LPIN3                 0.010   lipin 3 
CCDC155               0.010   coiled-coil domain containing 155 
MOSPD1                0.010   motile sperm domain containing 1 
GOLGA4                0.010   golgi autoantigen, golgin subfamily a, 4 
CNTLN                 0.008   centlein isoform 1 
SCLT1                 0.008   sodium channel associated protein 1 
DCTN1                 0.008   dynactin 1 isoform 4 
DCTN1                 0.008   dynactin 1 isoform 3 
DCTN1                 0.008   dynactin 1 isoform 2 
DCTN1                 0.008   dynactin 1 isoform 1 
AHNAK2                0.008   AHNAK nucleoprotein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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