Guide to the Human Genome
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Name: PPFIA1 Sequence: fasta or formatted (1185aa) NCBI GI: 29171753
Description:

PTPRF interacting protein alpha 1 isoform a

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1202aa] PTPRF interacting protein alpha 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         87           2
 C cysteine            0.8          9           1
 D aspartate           5.8         69           3
 E glutamate          10.8        128           3
 F phenylalanine       1.6         19           1
 G glycine             5.1         60           5
 H histidine           3.0         35           2
 I isoleucine          3.2         38           2
 K lysine              6.1         72           3
 L leucine            12.2        145           3
 M methionine          3.0         35           2
 N asparagine          3.6         43           2
 P proline             4.0         47           2
 Q glutamine           5.7         67           2
 R arginine            8.4        100           2
 S serine              9.1        108           3
 T threonine           4.5         53           2
 V valine              4.3         51           3
 W tryptophan          0.8         10           1
 Y tyrosine            0.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.999   PTPRF interacting protein alpha 1 isoform b 
PPFIA2                0.662   PTPRF interacting protein alpha 2 
PPFIA3                0.581   PTPRF interacting protein alpha 3 
PPFIA4                0.335   protein tyrosine phosphatase, receptor type, f polyp...
KIAA1026              0.077   kazrin isoform E 
PPFIBP2               0.063   PTPRF interacting protein, binding protein 2 (lipri...
PPFIBP1               0.059   PTPRF interacting protein binding protein 1 isoform ...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH10                 0.035   myosin, heavy polypeptide 10, non-muscle 
PLEC1                 0.032   plectin 1 isoform 11 
PLEC1                 0.032   plectin 1 isoform 10 
PLEC1                 0.032   plectin 1 isoform 8 
PLEC1                 0.032   plectin 1 isoform 7 
PLEC1                 0.032   plectin 1 isoform 6 
PLEC1                 0.032   plectin 1 isoform 3 
PLEC1                 0.032   plectin 1 isoform 2 
PLEC1                 0.032   plectin 1 isoform 1 
GOLGA3                0.032   Golgi autoantigen, golgin subfamily a, 3 
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
MYH4                  0.031   myosin, heavy polypeptide 4, skeletal muscle 
MYO18A                0.031   myosin 18A isoform b 
MYO18A                0.031   myosin 18A isoform a 
CENPF                 0.031   centromere protein F 
CGNL1                 0.031   cingulin-like 1 
CGN                   0.031   cingulin 
EEA1                  0.030   early endosome antigen 1, 162kD 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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