VAPB 30861

Name: VAPB	Sequence: fasta or formatted (243aa)		NCBI GI: 4759302
Description: VAMP-associated protein B/C		Referenced in: ER, Golgi, and the Secretory Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 13 1 C cysteine 1.6 4 1 D aspartate 5.8 14 2 E glutamate 8.6 21 2 F phenylalanine 4.1 10 2 G glycine 4.1 10 1 H histidine 1.2 3 1 I isoleucine 4.9 12 2 K lysine 9.5 23 2 L leucine 8.6 21 2 M methionine 3.3 8 1 N asparagine 4.1 10 1 P proline 5.8 14 1 Q glutamine 3.3 8 1 R arginine 4.9 12 2 S serine 7.8 19 3 T threonine 6.6 16 2 V valine 9.1 22 2 W tryptophan 0.4 1 1 Y tyrosine 0.8 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 VAMP-associated protein B/C VAPA 0.604 vesicle-associated membrane protein-associated prote... VAPA 0.560 vesicle-associated membrane protein-associated prote... MOSPD2 0.081 motile sperm domain containing 2 DIAPH1 0.020 diaphanous 1 isoform 2 DIAPH1 0.020 diaphanous 1 isoform 1 SMC1A 0.020 structural maintenance of chromosomes 1A SIPA1L1 0.018 signal-induced proliferation-associated 1 like 1 [Hom... RUFY2 0.018 RUN and FYVE domain-containing 2 isoform a RUFY2 0.018 RUN and FYVE domain-containing 2 isoform b USP8 0.018 ubiquitin specific peptidase 8 USP8 0.018 ubiquitin specific peptidase 8 USP8 0.018 ubiquitin specific peptidase 8 CHAF1A 0.015 chromatin assembly factor 1, subunit A (p150) MAP1B 0.015 microtubule-associated protein 1B SIPA1L2 0.015 signal-induced proliferation-associated 1 like 2 [H... LOC100292334 0.013 PREDICTED: similar to GOLGA8B protein, partial [Hom... ARHGEF7 0.013 PAK-interacting exchange factor beta isoform a [Hom... ARHGEF7 0.013 PAK-interacting exchange factor beta isoform a KRT72 0.013 keratin 72 isoform 1 GIGYF2 0.013 GRB10 interacting GYF protein 2 isoform c GIGYF2 0.013 GRB10 interacting GYF protein 2 isoform a GIGYF2 0.013 GRB10 interacting GYF protein 2 isoform b GIGYF2 0.013 GRB10 interacting GYF protein 2 isoform b KRT72 0.013 keratin 72 isoform 2 KRT72 0.013 keratin 72 isoform 1 MAP7 0.013 microtubule-associated protein 7 PUS3 0.013 pseudouridylate synthase 3 GOLGA6B 0.013 golgi autoantigen, golgin subfamily a, 6B ZBTB26 0.013 zinc finger and BTB domain containing 26 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.