Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94681069
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94681069 PHD finger protein 11 isoform b [Homo sapiens]
(292 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94681069 PHD finger protein 11 isoform b [Homo sapiens] 600 e-172
gi|94681065 PHD finger protein 11 isoform a [Homo sapiens] 600 e-172
gi|28557677 PHD finger protein 6 isoform 1 [Homo sapiens] 102 3e-22
gi|62865858 PHD finger protein 6 isoform 1 [Homo sapiens] 102 3e-22
gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens] 102 3e-22
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 74 2e-13
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 71 1e-12
gi|33620749 G2/M-phase specific E3 ubiquitin ligase [Homo sapiens] 65 5e-11
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 59 7e-09
gi|21361543 PHD finger protein 7 isoform 1 [Homo sapiens] 58 1e-08
gi|27894287 PHD finger protein 7 isoform 2 [Homo sapiens] 58 1e-08
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 48 1e-05
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 48 1e-05
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 45 1e-04
gi|40807477 retinoic acid induced 1 [Homo sapiens] 40 0.003
gi|45504380 jumonji domain containing 2B [Homo sapiens] 39 0.005
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 39 0.007
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 39 0.007
gi|117190334 PHD finger protein 16 [Homo sapiens] 37 0.027
gi|7662006 PHD finger protein 16 [Homo sapiens] 37 0.027
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 36 0.035
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 36 0.035
gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens] 36 0.046
gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens] 36 0.046
gi|98986459 jumonji domain containing 2A [Homo sapiens] 34 0.17
gi|31982906 cingulin-like 1 [Homo sapiens] 33 0.30
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 32 0.66
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 32 0.66
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 32 0.66
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 32 0.66
>gi|94681069 PHD finger protein 11 isoform b [Homo sapiens]
Length = 292
Score = 600 bits (1547), Expect = e-172
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK 60
MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK
Sbjct: 1 MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK 60
Query: 61 KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH
Sbjct: 61 KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
Query: 121 AQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVP 180
AQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVP
Sbjct: 121 AQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVP 180
Query: 181 FLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQ 240
FLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQ
Sbjct: 181 FLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQ 240
Query: 241 AAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY 292
AAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY
Sbjct: 241 AAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY 292
>gi|94681065 PHD finger protein 11 isoform a [Homo sapiens]
Length = 331
Score = 600 bits (1547), Expect = e-172
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK 60
MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK
Sbjct: 40 MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK 99
Query: 61 KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH
Sbjct: 100 KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 159
Query: 121 AQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVP 180
AQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVP
Sbjct: 160 AQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVP 219
Query: 181 FLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQ 240
FLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQ
Sbjct: 220 FLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNFQ 279
Query: 241 AAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY 292
AAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY
Sbjct: 280 AAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSSTSISSLSY 331
>gi|28557677 PHD finger protein 6 isoform 1 [Homo sapiens]
Length = 365
Score = 102 bits (255), Expect = 3e-22
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 3 KRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQDPLNPDRSFDVESV 59
+R C C +D E L ++++ +AAH C+L+SS LV D + L F +E V
Sbjct: 14 QRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLG---GFSIEDV 70
Query: 60 KKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQ 119
+KEI+RG KL C CH GAT+GCD+K C++ YH+ CA D A + +GIY + C++
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 120 H 120
H
Sbjct: 131 H 131
Score = 90.9 bits (224), Expect = 1e-18
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 6 CALCPKDVEYNV----LYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKK 61
C C E N L+ ++ AAH C+L+SSG V+ FD+++V +
Sbjct: 212 CGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQ 270
Query: 62 EIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHA 121
EI+RG+++KC C + GAT+GC++K C K YH+ C +D A + RGIYKL C+ H+
Sbjct: 271 EIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHS 330
>gi|62865858 PHD finger protein 6 isoform 1 [Homo sapiens]
Length = 365
Score = 102 bits (255), Expect = 3e-22
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 3 KRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQDPLNPDRSFDVESV 59
+R C C +D E L ++++ +AAH C+L+SS LV D + L F +E V
Sbjct: 14 QRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLG---GFSIEDV 70
Query: 60 KKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQ 119
+KEI+RG KL C CH GAT+GCD+K C++ YH+ CA D A + +GIY + C++
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 120 H 120
H
Sbjct: 131 H 131
Score = 90.9 bits (224), Expect = 1e-18
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 6 CALCPKDVEYNV----LYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKK 61
C C E N L+ ++ AAH C+L+SSG V+ FD+++V +
Sbjct: 212 CGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQ 270
Query: 62 EIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHA 121
EI+RG+++KC C + GAT+GC++K C K YH+ C +D A + RGIYKL C+ H+
Sbjct: 271 EIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHS 330
>gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens]
Length = 312
Score = 102 bits (255), Expect = 3e-22
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 3 KRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQDPLNPDRSFDVESV 59
+R C C +D E L ++++ +AAH C+L+SS LV D + L F +E V
Sbjct: 14 QRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLG---GFSIEDV 70
Query: 60 KKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQ 119
+KEI+RG KL C CH GAT+GCD+K C++ YH+ CA D A + +GIY + C++
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 120 H 120
H
Sbjct: 131 H 131
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 6 CALCPKDVEYNV----LYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKK 61
C C E N L+ ++ AAH C+L+SSG V+ FD+++V +
Sbjct: 213 CGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQ 271
Query: 62 EIQRGRKLKCKF 73
EI+RG+++ C F
Sbjct: 272 EIKRGKRMVCSF 283
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 73.6 bits (179), Expect = 2e-13
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 22/125 (17%)
Query: 2 EKRTCALCPK--DVEYN----VLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFD 55
+ R CALC D N +LY Q+E H NC L+S+ + E +D
Sbjct: 1869 DNRQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS--------- 1917
Query: 56 VESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKL 115
+++V + RG++L+C+FC K GATVGC L +C NYHF C++ + V D K+
Sbjct: 1918 LKNVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDD-----KKV 1972
Query: 116 LCQQH 120
CQ+H
Sbjct: 1973 YCQRH 1977
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 71.2 bits (173), Expect = 1e-12
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 22/125 (17%)
Query: 2 EKRTCALCPKDVEYN------VLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFD 55
+ R CALC K + + +LY Q+E H NC ++S+ + E D
Sbjct: 1577 DPRQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFEENDGS--------- 1625
Query: 56 VESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKL 115
+++V + RGR+++C+ C K GATVGC L +C N+HF CA+ + Q D K+
Sbjct: 1626 LKNVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDD-----KKV 1680
Query: 116 LCQQH 120
CQ+H
Sbjct: 1681 FCQKH 1685
>gi|33620749 G2/M-phase specific E3 ubiquitin ligase [Homo sapiens]
Length = 706
Score = 65.5 bits (158), Expect = 5e-11
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 9 CPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRK 68
CP +Y + N+ H CLL SSG+ + ++ F +E ++KE+ R K
Sbjct: 23 CPN--KYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEE--EGVYGFLIEDIRKEVNRASK 78
Query: 69 LKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFPIIAQ 128
LKC C K GA++GC C ++YHF C + + + Q G + C H II
Sbjct: 79 LKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFCWDHRPVQIITS 135
Query: 129 S 129
+
Sbjct: 136 N 136
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 58.5 bits (140), Expect = 7e-09
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 29 HENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNC 88
H NC L+S+ + E + +N V+ ++RG ++KC FCHK GAT GC C
Sbjct: 4429 HLNCALWSTEVYETQAGALIN---------VELALRRGLQMKCVFCHKTGATSGCHRFRC 4479
Query: 89 NKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLSGN 148
YHF CA K + D +LC H I Q + V R+
Sbjct: 4480 TNIYHFTCAIKAQCMFFKDKT-----MLCPMHKPKGIHEQELSYFAVFRR---------V 4525
Query: 149 HVQPPETMKCNTFIRQVKEEH 169
+VQ E + + +++ + +H
Sbjct: 4526 YVQRDEVRQIASIVQRGERDH 4546
Score = 45.4 bits (106), Expect = 6e-05
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 28 AHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKN 87
AH C+ +S G+ C+ ++PL + +V K + G +C FC GAT+ C +
Sbjct: 251 AHHRCVEWSLGV--CQMEEPL-------LVNVDKAVVSGSTERCAFCKHLGATIKCCEEK 301
Query: 88 CNKNYHFFCA 97
C + YH+ CA
Sbjct: 302 CTQMYHYPCA 311
>gi|21361543 PHD finger protein 7 isoform 1 [Homo sapiens]
Length = 381
Score = 57.8 bits (138), Expect = 1e-08
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 6 CALC---PKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKE 62
C LC P D E + F Q +NI+ H CL+ SS L + + F E +KKE
Sbjct: 33 CWLCLREPGDPE-KLGEFLQKDNISVHYFCLILSSKLPQRGQSN--RGFHGFLPEDIKKE 89
Query: 63 IQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
R + C C K+GA + C C +N+H C ++ + Q G YK C +H
Sbjct: 90 AARASRKICFVCKKKGAAINCQKDQCLRNFHLPCGQERGCLSQ---FFGEYKSFCDKH 144
>gi|27894287 PHD finger protein 7 isoform 2 [Homo sapiens]
Length = 342
Score = 57.8 bits (138), Expect = 1e-08
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 6 CALC---PKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKE 62
C LC P D E + F Q +NI+ H CL+ SS L + + F E +KKE
Sbjct: 33 CWLCLREPGDPE-KLGEFLQKDNISVHYFCLILSSKLPQRGQSN--RGFHGFLPEDIKKE 89
Query: 63 IQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
R + C C K+GA + C C +N+H C ++ + Q G YK C +H
Sbjct: 90 AARASRKICFVCKKKGAAINCQKDQCLRNFHLPCGQERGCLSQ---FFGEYKSFCDKH 144
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 47.8 bits (112), Expect = 1e-05
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 23 SENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVG 82
S HE C+L+++G+ L R + ++ ++ R++KC C + GAT+G
Sbjct: 1849 SNEFWVHEGCILWANGIY-------LVCGRLYGLQEA---LEIAREMKCSHCQEAGATLG 1898
Query: 83 CDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
C K C+ YH+ CA D + + + + C +H
Sbjct: 1899 CYNKGCSFRYHYPCAIDADCLLHEEN----FSVRCPKH 1932
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 47.8 bits (112), Expect = 1e-05
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 23 SENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVG 82
S HE C+L+++G+ L R + ++ ++ R++KC C + GAT+G
Sbjct: 1849 SNEFWVHEGCILWANGIY-------LVCGRLYGLQEA---LEIAREMKCSHCQEAGATLG 1898
Query: 83 CDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
C K C+ YH+ CA D + + + + C +H
Sbjct: 1899 CYNKGCSFRYHYPCAIDADCLLHEEN----FSVRCPKH 1932
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 29 HENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNC 88
H NC L+S+ + E + +N V+ + RG KC C + GAT C+ C
Sbjct: 5059 HLNCALWSTEVYETQGGALMN---------VEVALHRGLLTKCSLCQRTGATSSCNRMRC 5109
Query: 89 NKNYHFFCA 97
YHF CA
Sbjct: 5110 PNVYHFACA 5118
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 28 AHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKN 87
AH C +S+G+ E + D K I G +C C + GA++ C
Sbjct: 138 AHHWCAAWSAGVWGQEGPELCGVD---------KAIFSGISQRCSHCTRLGASIPCRSPG 188
Query: 88 CNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFPIIAQSAK 131
C + YHF CA + + +LLC +H++ + A+
Sbjct: 189 CPRLYHFPCATASGSFLSMKTL----QLLCPEHSEGAAYLEEAR 228
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 29 HENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNC 88
HE C +++ G+ L + F ++ K + C C + GAT+GC K C
Sbjct: 1825 HEACAVWTGGVY-------LVAGKLFGLQEAMKVAV---DMMCSSCQEAGATIGCCHKGC 1874
Query: 89 NKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFP 124
YH+ CA + + + L C +H + P
Sbjct: 1875 LHTYHYPCASDAGCI----FIEENFSLKCPKHKRLP 1906
>gi|45504380 jumonji domain containing 2B [Homo sapiens]
Length = 1096
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 68 KLKCKFCHKR-----GATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
KLKC +C KR GA + C ++C+ ++H CA + + D + + C +H
Sbjct: 849 KLKCVYCRKRMKKVSGACIQCSYEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCLKH 906
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 38.5 bits (88), Expect = 0.007
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 5 TCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQ 64
+C LCP + ++ H C LY G V D D L P V +
Sbjct: 384 SCELCPNQ---DGIFKETDAGRWVHIVCALYVPG-VAFGDIDKLRP-----VTLTEMNYS 434
Query: 65 RGRKLKCKFCH-----KRGATVGCDLKNCNKNYHFFCAKKDDAVPQS---DGVRGIYKLL 116
+ +C FC + G + CD C +H CA+K+ + ++ + + +
Sbjct: 435 KYGAKECSFCEDPRFARTGVCISCDAGMCRAYFHVTCAQKEGLLSEAAAEEDIADPFFAY 494
Query: 117 CQQHA 121
C+QHA
Sbjct: 495 CKQHA 499
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 38.5 bits (88), Expect = 0.007
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 5 TCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQ 64
+C LCP + ++ H C LY G V D D L P V +
Sbjct: 384 SCELCPNQ---DGIFKETDAGRWVHIVCALYVPG-VAFGDIDKLRP-----VTLTEMNYS 434
Query: 65 RGRKLKCKFCH-----KRGATVGCDLKNCNKNYHFFCAKKDDAVPQS---DGVRGIYKLL 116
+ +C FC + G + CD C +H CA+K+ + ++ + + +
Sbjct: 435 KYGAKECSFCEDPRFARTGVCISCDAGMCRAYFHVTCAQKEGLLSEAAAEEDIADPFFAY 494
Query: 117 CQQHA 121
C+QHA
Sbjct: 495 CKQHA 499
>gi|117190334 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 36.6 bits (83), Expect = 0.027
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 6 CALCPKDVEYNVLYFAQSENIAAHENCLLYSSGL-VECEDQDPLNPDRSFDVESVKKEIQ 64
C LCPK + L ++ AH +C L+ + + C P+R + +
Sbjct: 255 CVLCPK--KGGALKTTKTGTKWAHVSCALWIPEVSIAC-------PERMEPITKISHIPP 305
Query: 65 RGRKLKCKFCH-KRGATVGCDLKNCNKNYHFFCA-----KKDDAVPQSDGVRGIYKLLCQ 118
L C C K GA + C +K+C +H CA + + + D V+ +K C
Sbjct: 306 SRWALVCNLCKLKTGACIQCSIKSCITAFHVTCAFEHGLEMKTILDEGDEVK--FKSYCL 363
Query: 119 QHAQ 122
+H+Q
Sbjct: 364 KHSQ 367
>gi|7662006 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 36.6 bits (83), Expect = 0.027
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 6 CALCPKDVEYNVLYFAQSENIAAHENCLLYSSGL-VECEDQDPLNPDRSFDVESVKKEIQ 64
C LCPK + L ++ AH +C L+ + + C P+R + +
Sbjct: 255 CVLCPK--KGGALKTTKTGTKWAHVSCALWIPEVSIAC-------PERMEPITKISHIPP 305
Query: 65 RGRKLKCKFCH-KRGATVGCDLKNCNKNYHFFCA-----KKDDAVPQSDGVRGIYKLLCQ 118
L C C K GA + C +K+C +H CA + + + D V+ +K C
Sbjct: 306 SRWALVCNLCKLKTGACIQCSIKSCITAFHVTCAFEHGLEMKTILDEGDEVK--FKSYCL 363
Query: 119 QHAQ 122
+H+Q
Sbjct: 364 KHSQ 367
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 36.2 bits (82), Expect = 0.035
Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 6 CALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQR 65
C LCPK + + +S H +C L+ + +P++ + V
Sbjct: 258 CLLCPK--KGGAMKPTRSGTKWVHVSCALW------IPEVSIGSPEKMEPITKVSHIPSS 309
Query: 66 GRKLKCKFCHKR-GATVGCDLKNCNKNYHFFCA-----KKDDAVPQSDGVRGIYKLLCQQ 119
L C C+++ GA++ C +KNC +H CA + + ++D V+ +K C +
Sbjct: 310 RWALVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVK--FKSYCPK 367
Query: 120 HAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCN 159
H+ +S G ++ G + N ++P +++ N
Sbjct: 368 HSSHRKPEESLG-KGAAQENGAPECSPRNPLEPFASLEQN 406
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 36.2 bits (82), Expect = 0.035
Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 6 CALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQR 65
C LCPK + + +S H +C L+ + +P++ + V
Sbjct: 258 CLLCPK--KGGAMKPTRSGTKWVHVSCALW------IPEVSIGSPEKMEPITKVSHIPSS 309
Query: 66 GRKLKCKFCHKR-GATVGCDLKNCNKNYHFFCA-----KKDDAVPQSDGVRGIYKLLCQQ 119
L C C+++ GA++ C +KNC +H CA + + ++D V+ +K C +
Sbjct: 310 RWALVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVK--FKSYCPK 367
Query: 120 HAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCN 159
H+ +S G ++ G + N ++P +++ N
Sbjct: 368 HSSHRKPEESLG-KGAAQENGAPECSPRNPLEPFASLEQN 406
>gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens]
Length = 1047
Score = 35.8 bits (81), Expect = 0.046
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 68 KLKCKFCHKR-----GATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQ 122
KLKC FC R GA + C C ++H CA + + D + + C +H
Sbjct: 807 KLKCIFCRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKV 866
Query: 123 FPIIAQSA 130
P + A
Sbjct: 867 NPNVKSKA 874
>gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens]
Length = 1056
Score = 35.8 bits (81), Expect = 0.046
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 68 KLKCKFCHKR-----GATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQ 122
KLKC FC R GA + C C ++H CA + + D + + C +H
Sbjct: 807 KLKCIFCRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKV 866
Query: 123 FPIIAQSA 130
P + A
Sbjct: 867 NPNVKSKA 874
>gi|98986459 jumonji domain containing 2A [Homo sapiens]
Length = 1064
Score = 33.9 bits (76), Expect = 0.17
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 68 KLKCKFCHKR-----GATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
KLKC FC KR G V C C +H CA+ + Q D + + C +H
Sbjct: 827 KLKCIFCKKRRKRTAGCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRH 884
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 33.1 bits (74), Expect = 0.30
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 155 TMKCNTFIRQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETT 214
T++ + + KE++ R A ++ +K EA ++ D++ + E+L D
Sbjct: 968 TLELQNQLDEYKEKNRREL-AEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026
Query: 215 SESDYEEIGSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSF 274
++ + AL +L E T + + +E K H R + +K+ + + L+ L
Sbjct: 1027 AQDE------ALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEE 1080
Query: 275 QENRDLMSSSTSIS 288
+ N DL+S S S
Sbjct: 1081 RNNSDLLSERISRS 1094
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 32.0 bits (71), Expect = 0.66
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 163 RQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEI 222
+Q+ EE TDA V +K + + L E+ + E + ++ S+ +I
Sbjct: 773 KQLLEEKAAMTDAMVPRSSYEKLQSS-----LESEVSVLASKLKESVKEKEKVHSEVVQI 827
Query: 223 GSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRD--- 279
S + + ++ + E++++ Q++QQ +EE+ ++ ++ +E++D
Sbjct: 828 RSEVSQVKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKI 887
Query: 280 ---------LMSSSTSISSLSY 292
L + S+S LSY
Sbjct: 888 NEMSKEVTKLKEALNSLSQLSY 909
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 32.0 bits (71), Expect = 0.66
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 163 RQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEI 222
+Q+ EE TDA V +K + + L E+ + E + ++ S+ +I
Sbjct: 762 KQLLEEKAAMTDAMVPRSSYEKLQSS-----LESEVSVLASKLKESVKEKEKVHSEVVQI 816
Query: 223 GSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRD--- 279
S + + ++ + E++++ Q++QQ +EE+ ++ ++ +E++D
Sbjct: 817 RSEVSQVKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKI 876
Query: 280 ---------LMSSSTSISSLSY 292
L + S+S LSY
Sbjct: 877 NEMSKEVTKLKEALNSLSQLSY 898
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 32.0 bits (71), Expect = 0.66
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 163 RQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEI 222
+Q+ EE TDA V +K + + L E+ + E + ++ S+ +I
Sbjct: 741 KQLLEEKAAMTDAMVPRSSYEKLQSS-----LESEVSVLASKLKESVKEKEKVHSEVVQI 795
Query: 223 GSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRD--- 279
S + + ++ + E++++ Q++QQ +EE+ ++ ++ +E++D
Sbjct: 796 RSEVSQVKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKI 855
Query: 280 ---------LMSSSTSISSLSY 292
L + S+S LSY
Sbjct: 856 NEMSKEVTKLKEALNSLSQLSY 877
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 32.0 bits (71), Expect = 0.66
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 163 RQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEI 222
+Q+ EE TDA V +K + + L E+ + E + ++ S+ +I
Sbjct: 770 KQLLEEKAAMTDAMVPRSSYEKLQSS-----LESEVSVLASKLKESVKEKEKVHSEVVQI 824
Query: 223 GSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRD--- 279
S + + ++ + E++++ Q++QQ +EE+ ++ ++ +E++D
Sbjct: 825 RSEVSQVKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKI 884
Query: 280 ---------LMSSSTSISSLSY 292
L + S+S LSY
Sbjct: 885 NEMSKEVTKLKEALNSLSQLSY 906
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,665,419
Number of Sequences: 37866
Number of extensions: 537067
Number of successful extensions: 1804
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 116
length of query: 292
length of database: 18,247,518
effective HSP length: 101
effective length of query: 191
effective length of database: 14,423,052
effective search space: 2754802932
effective search space used: 2754802932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.