Guide to the Human Genome
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Name: PHF7 Sequence: fasta or formatted (381aa) NCBI GI: 21361543
Description:

PHD finger protein 7 isoform 1

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [342aa] PHD finger protein 7 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         17           3
 C cysteine            8.1         31           2
 D aspartate           4.5         17           1
 E glutamate           8.1         31           2
 F phenylalanine       4.2         16           2
 G glycine             5.8         22           1
 H histidine           3.9         15           1
 I isoleucine          4.5         17           1
 K lysine              8.1         31           3
 L leucine             6.6         25           2
 M methionine          0.8          3           1
 N asparagine          3.4         13           2
 P proline             5.8         22           1
 Q glutamine           5.5         21           2
 R arginine            7.3         28           2
 S serine              9.4         36           2
 T threonine           3.1         12           1
 V valine              2.1          8           1
 W tryptophan          1.8          7           1
 Y tyrosine            2.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 7 isoform 1 
PHF7                  0.870   PHD finger protein 7 isoform 2 
G2E3                  0.293   G2/M-phase specific E3 ubiquitin ligase 
PHF6                  0.050   PHD finger protein 6 isoform 2 
PHF6                  0.048   PHD finger protein 6 isoform 1 
PHF6                  0.048   PHD finger protein 6 isoform 1 
PHF11                 0.041   PHD finger protein 11 isoform b 
PHF11                 0.041   PHD finger protein 11 isoform a 
MLL4                  0.031   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL3                  0.026   myeloid/lymphoid or mixed-lineage leukemia 3 
MLL                   0.024   myeloid/lymphoid or mixed-lineage leukemia protein [...
BRPF1                 0.022   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.022   bromodomain and PHD finger-containing protein 1 isof...
BRPF3                 0.021   bromodomain and PHD finger containing, 3 
BRD1                  0.021   bromodomain containing protein 1 
RAI1                  0.020   retinoic acid induced 1 
NSD1                  0.019   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.019   nuclear receptor binding SET domain protein 1 isofor...
MLL2                  0.019   myeloid/lymphoid or mixed-lineage leukemia 2 
MYST4                 0.019   MYST histone acetyltransferase (monocytic leukemia)...
PHF17                 0.017   PHD finger protein 17 short isoform 
PHF17                 0.017   PHD finger protein 17 long isoform 
MYST3                 0.017   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.017   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.017   MYST histone acetyltransferase (monocytic leukemia)...
FRAS1                 0.015   Fraser syndrome 1 
PHF16                 0.015   PHD finger protein 16 
PHF16                 0.015   PHD finger protein 16 
TCF20                 0.015   transcription factor 20 isoform 1 
ZNF828                0.014   zinc finger protein 828 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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