Guide to the Human Genome
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Name: PHF7 Sequence: fasta or formatted (342aa) NCBI GI: 27894287
Description:

PHD finger protein 7 isoform 2

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [381aa] PHD finger protein 7 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         13           3
 C cysteine            8.5         29           2
 D aspartate           3.5         12           1
 E glutamate           7.6         26           2
 F phenylalanine       4.1         14           2
 G glycine             5.6         19           1
 H histidine           4.1         14           1
 I isoleucine          4.7         16           1
 K lysine              9.1         31           3
 L leucine             6.4         22           2
 M methionine          0.9          3           1
 N asparagine          3.8         13           2
 P proline             5.8         20           1
 Q glutamine           5.3         18           2
 R arginine            7.6         26           2
 S serine              9.9         34           2
 T threonine           3.5         12           1
 V valine              2.3          8           1
 W tryptophan          1.8          6           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 7 isoform 2 
PHF7                  0.974   PHD finger protein 7 isoform 1 
G2E3                  0.253   G2/M-phase specific E3 ubiquitin ligase 
PHF6                  0.056   PHD finger protein 6 isoform 2 
PHF6                  0.054   PHD finger protein 6 isoform 1 
PHF6                  0.054   PHD finger protein 6 isoform 1 
PHF11                 0.046   PHD finger protein 11 isoform b 
PHF11                 0.046   PHD finger protein 11 isoform a 
MLL3                  0.036   myeloid/lymphoid or mixed-lineage leukemia 3 
MLL4                  0.035   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL                   0.026   myeloid/lymphoid or mixed-lineage leukemia protein [...
BRPF1                 0.025   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.025   bromodomain and PHD finger-containing protein 1 isof...
BRPF3                 0.024   bromodomain and PHD finger containing, 3 
BRD1                  0.024   bromodomain containing protein 1 
RAI1                  0.022   retinoic acid induced 1 
MLL2                  0.022   myeloid/lymphoid or mixed-lineage leukemia 2 
PHF17                 0.019   PHD finger protein 17 short isoform 
PHF17                 0.019   PHD finger protein 17 long isoform 
ZNF266                0.019   zinc finger protein 266 
ZNF266                0.019   zinc finger protein 266 
MYST4                 0.018   MYST histone acetyltransferase (monocytic leukemia)...
PHF16                 0.017   PHD finger protein 16 
PHF16                 0.017   PHD finger protein 16 
TCF20                 0.017   transcription factor 20 isoform 1 
ZNF80                 0.017   zinc finger protein 80 
ZNF828                0.015   zinc finger protein 828 
ZFP62                 0.015   zinc finger protein 62 homolog 
ZNF426                0.015   zinc finger protein 426 
ZNF286A               0.014   zinc finger protein 286 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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